Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2600 ATGAAACCCTACAACTTCTCCTTTGCAATTCCCTTCCTTCTAATACTCTTGTTATTTCGTTTTCTAATCCAATCGGCGGCTGATTCCAGAGCTACTCAGGCGGCTCTCATATGTTCCAACAACACTGCTTCGCTGCCGGAGCGATCGACCTTTGTATCGAATTTCTTGGACTCTATGGATGCGGTTACTCCTCTTATTGCTTCACAGCGATTTGCAGCCGTTGTGAATGGGACTGGAAATACGTCTGTTTATGCTTTTGGAGAGTGTATGAACGATCTTACTCAATCGGATTGTGATCTCTGTTTTGCCCAGATGAAAACTCAGATCCTGCGGTGTCTCCCCTTTCAGCTTGCTACTCGAGGGGGCAGACTTTTCTATGACGGGTGTTATGTTAGGTATGATTATTATAACTTCTTTAACGAATCCTTGAGTGCTGTGGATAGGACTGTATGTGGGAAATCGGATTACAGTGGGAATCGGACTATTTTTAGTGACAATGCTATGAAATTGGCGAGGAATTTGAGTGTAGTAGCGCCCAAGAACGATGGGTTTGCTGTGGGATTGGTGAATTTGAGAAATGTGTCCGTTTATGGATTGGGTCAGTGTTGGAAATTTGTGAAAGGGACTTCTTGTTCCAAGTGTTTGGTTGATGCAGCTAAGGACATTGGTTCTTGTCCTCCAAAAACTGAAGGAAGGGTGTTGAATGCTGGCTGTTACTTCAGATATTCAACTGAACGATTTTATTTCAACAGCACGGCAACCGCTACTGGAGGAAATGGAAGTCGTCGTCTGGCGGTAATTTTGGCTTCAGTATCTGCTGCTGTGGCTGCTGCATTGATTATTTCAACGGTTGTTTTCTGTGCCAGAAGGAGAGTAGTCAGGAAACGCAAAGAGAAAAAGCAACTCGGTCCTCTTGTGGCTATTGTTAACAAGTCCAAGCTTAATTTTTCATATGAGACTCTTGAGAGGGCCACAAATTACTTTGACCAATCCAATAAACTAGGACAAGGAGGTTCTGGTTCAGTTTATAAGGGAACCCTATCAGATGGCAGAGTTGTAGCAATTAAGAGGCTTTTCTTCAATACAAGACAATGGGTGGACCATTTCTTTAATGAAGTAAATCTTATTAGCGGCATCCGACACAAAAATCTTGTAGGGCTGCTGGGATGCAGCATTACAGGCCCTGAAAGCCTCCTTGTTTATGAATACGTGCCAAATCAGAGCTTGCACGATTACCTGTTTGGTAACAAGAATGTCCAGCCACTGAGTTGGGAATCCAGGTTTAAGATTGTCTTAGGCACAGCTGAAGGCTTGGCTTATCTTCATGAGGAGTCAAATGTGAAAATCATTCATCGCGACATAAAACTAAGCAATATTCTGCTGGATAATGATTTCACTCCGAAGATTGCTGATTTTGGACTTGCTAGACTGCTTCCCGAAGATAAGACACACATTAGTACCGCAATTGCTGGCACACTAGGTTACATGGCTCCTGAATATGTAGTGCGTGGCAAGTTGTCTGAAAAGGCCGATGTTTACAGTTTTGGAGTTTTTGCCATTGAAGTCATCACTGGAAGGAGGAATAATCACTTCTATCAAGATTCAACGTCCATCTTACAAAAGGTATGGAATTTGTATGGAGAGGGAAAGCTATATGCAGCTGTCGATCCTATATTAGCGGGTGATTATCCACGAGACGAAGCATCTCGGTTGCTTCAAATAGGTCTAGTTTGCGTGCAAGCCTTTGCTGATCTAAGGCCATCCATGTCGATGGTTGTGAAAATGCTTACAGCAAATTACGAGATTCCCCAGCCAAAACAGCCTCCATATCTTCATCCTTCAAGTGGAAACATAAAATCCCAAAATTCTTCAGACTCATCCAATCCCATTTTAGAGTTTGATATACATGAAGGGAAAACAAACAAAAGCTCACATTAG 1938 42.72 MKPYNFSFAIPFLLILLLFRFLIQSAADSRATQAALICSNNTASLPERSTFVSNFLDSMDAVTPLIASQRFAAVVNGTGNTSVYAFGECMNDLTQSDCDLCFAQMKTQILRCLPFQLATRGGRLFYDGCYVRYDYYNFFNESLSAVDRTVCGKSDYSGNRTIFSDNAMKLARNLSVVAPKNDGFAVGLVNLRNVSVYGLGQCWKFVKGTSCSKCLVDAAKDIGSCPPKTEGRVLNAGCYFRYSTERFYFNSTATATGGNGSRRLAVILASVSAAVAAALIISTVVFCARRRVVRKRKEKKQLGPLVAIVNKSKLNFSYETLERATNYFDQSNKLGQGGSGSVYKGTLSDGRVVAIKRLFFNTRQWVDHFFNEVNLISGIRHKNLVGLLGCSITGPESLLVYEYVPNQSLHDYLFGNKNVQPLSWESRFKIVLGTAEGLAYLHEESNVKIIHRDIKLSNILLDNDFTPKIADFGLARLLPEDKTHISTAIAGTLGYMAPEYVVRGKLSEKADVYSFGVFAIEVITGRRNNHFYQDSTSILQKVWNLYGEGKLYAAVDPILAGDYPRDEASRLLQIGLVCVQAFADLRPSMSMVVKMLTANYEIPQPKQPPYLHPSSGNIKSQNSSDSSNPILEFDIHEGKTNKSSH 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34680157 34684343 - CmPI595203_05g026000.1 Cmu05g2600 417514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2600 645 Gene3D Transferase(Phosphotransferase) domain 1 404 607 - -
Cmu05g2600 645 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 167 626 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Cmu05g2600 645 FunFam Cysteine-rich receptor-like protein kinase 3 147 247 - -
Cmu05g2600 645 Pfam Salt stress response/antifungal 38 135 IPR002902 -
Cmu05g2600 645 Pfam Salt stress response/antifungal 151 244 IPR002902 -
Cmu05g2600 645 Gene3D - 144 247 IPR038408 -
Cmu05g2600 645 Gene3D - 31 138 IPR038408 -
Cmu05g2600 645 ProSiteProfiles Gnk2-homologous domain profile. 33 138 IPR002902 -
Cmu05g2600 645 CDD STKc_IRAK 334 597 - -
Cmu05g2600 645 Gene3D Phosphorylase Kinase; domain 1 288 403 - -
Cmu05g2600 645 FunFam Cysteine-rich receptor-like protein kinase 2 294 403 - -
Cmu05g2600 645 MobiDBLite consensus disorder prediction 606 645 - -
Cmu05g2600 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g2600 645 ProSiteProfiles Protein kinase domain profile. 328 611 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g2600 645 FunFam Cysteine-rich receptor-like protein kinase 2 404 604 - -
Cmu05g2600 645 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524(InterPro)
Cmu05g2600 645 SUPERFAMILY Protein kinase-like (PK-like) 314 626 IPR011009 -
Cmu05g2600 645 MobiDBLite consensus disorder prediction 611 630 - -
Cmu05g2600 645 Pfam Protein kinase domain 329 530 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g2600 645 SMART serkin_6 328 611 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g2600 645 FunFam Cysteine-rich receptor-like protein kinase 2 31 138 - -
Cmu05g2600 645 ProSiteProfiles Gnk2-homologous domain profile. 144 247 IPR002902 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2600 Cmu-Chr5:34680157 Cmu07g1022 Cmu-Chr7:24961755 8.00E-79 dispersed
Cmu06g0053 Cmu-Chr6:504632 Cmu05g2600 Cmu-Chr5:34680157 5.00E-12 dispersed
Cmu06g1451 Cmu-Chr6:25773715 Cmu05g2600 Cmu-Chr5:34680157 4.10E-81 transposed
Cmu10g2160 Cmu-Chr10:27639042 Cmu05g2600 Cmu-Chr5:34680157 1.10E-147 wgd
Cmu05g2600 Cmu-Chr5:34680157 Cmu08g1713 Cmu-Chr8:28587755 1.30E-129 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75573 PF00069 Pkinase 2.00E-44 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2600 - - - 0.0