Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmu05g2639 | ATGTATCACGGACTTGGCGCTAACCGCCTCGTCTTTCGAGCCAGTATCACCAAGTGCGTCAAGGTTGGTATAATTGATGAAGCCATACGGATATTCGATGAAATGACTCAATCCAATTGCACTGTAACTAGCAGAGACTACAATCGCTTCATTGGTGTTTTAATTAGCCGCTCACGTTTCGATTTGGCCGAAAGCTATTACTCGAGAATGATACCACAAGGTTTTTCTCTTACTCCATTTACTTACTCCAGGTTCATTTCTGCTTTATGTGAAATTAAGAATTTCGGGCTCATAGGAAGGCTCTTAGAAGATATGCATAAACTTGGCTATCTTCCTGACATTTGGGCATTTAATATATATTTGAATCTCTTATTCCGCGAGAACTTTTTAGAATTAGCTCTAGAATTTTTTGACGAAATGGTTGCGAAAGGAAGGGAACCTGATGTTGTAACATACACTATAATAGTCGATAGATTGTGCAAAGCCAAACAATATGACAAAGCTGTCGAGTTTTGGCGTTGTATGGTTAATAAGGGGCTTACTCCGGACATGAAAGCCTGTACAGCCCTCGTTGTTGGGCTCTGCGATGGTGGGAAGGTTGATTTAGCCTACGAGCTTACGGTTGGTGAAATGAAGGGTCAGATGAAGTTCAACAACTTGATTTTTAATTCTCTGATGAGCGGGTTTTGTAAGGTTGGTCGGATCTCCAAGGCACTGGCCATCAAATCATTTATGAGTAAAAGTGGTTGCGAGCCGGATTTGGTTACTTATAATATTTTGCTGAACTTTTTTTGCGATGGGCTGATGTTAGAGGTGGCCGGAAAGTCTATGAAAAAGATGGAGAGGATAGGAATGGAGCCTGATGTGTATAGTTACAATCAACTTCTTAAAGGTCTTTGCAAAGCTAATAGGCTGGATAAGGCATATAAATTGATGAATAAAATGTGGGCAAAAGGTTTGTGTGATACCGTTTCATACAATACCGTGATAGGTGCATTATGCAAAGCATTGGCAACTAGAAAGGCATACAAGCTGTTTGAGGAAATGGGCCAGAAAGGTGTCGCTCCAGACGTGGGAACATTTGCCACTCTTATAAAAGCATTTCTTAAAGAAGGCAGCTCCCATATTGCGAAGAGACTTCTTCAAAAAATGACAGAGACAGTTCTGTTACCTGATCACATATTTTATACAACGGTCATAGATTACCTTTGTAAGACAGGGAACATTGAGATGGCGCAAGGCGTCTTCCGTGACATGATAGAGATAGGAATTGCCCCTGATGTGGTTTCATATAATGCGCTTATAAATGGGCTTTGCAAGGCCTTCAAAGTTAGTGAGGCCATGTTACTGTATGAGGAAATGCAAATTAGAGGATGCTATCCTGACGAGGTAACTTTCAAACTGATAATTGGAGGACTTTTACGAGAAAAGAAACTTTCTTTAGCTTGTCAGGGATGCTGGTTAACTATGAAACTAGAATCAAATGGGCCTCATAAACATATAAATCATATTTTGATGCGACTGTTCATCTGTGGTACCATTGGGAGATCCTTTGGCAATTGCAAGATTCGATCTTCCTTTCTTGGAGACTTGGACCAGCTCTTTGACTTCTGGTGCTCCATTCCATGCTTGCATGCATATACATACTGTTTAAATTCCTTCCACCATCCACCCCATCTTGGGGCTGGTGATCATTTCAGAAGTCAGGTCGGGGAAGCCTTGCCTGGCATCAAAACCACGGGGATCGAGGACTGTACTTCACCATTACATTGA | 1773 | 41.4 | MYHGLGANRLVFRASITKCVKVGIIDEAIRIFDEMTQSNCTVTSRDYNRFIGVLISRSRFDLAESYYSRMIPQGFSLTPFTYSRFISALCEIKNFGLIGRLLEDMHKLGYLPDIWAFNIYLNLLFRENFLELALEFFDEMVAKGREPDVVTYTIIVDRLCKAKQYDKAVEFWRCMVNKGLTPDMKACTALVVGLCDGGKVDLAYELTVGEMKGQMKFNNLIFNSLMSGFCKVGRISKALAIKSFMSKSGCEPDLVTYNILLNFFCDGLMLEVAGKSMKKMERIGMEPDVYSYNQLLKGLCKANRLDKAYKLMNKMWAKGLCDTVSYNTVIGALCKALATRKAYKLFEEMGQKGVAPDVGTFATLIKAFLKEGSSHIAKRLLQKMTETVLLPDHIFYTTVIDYLCKTGNIEMAQGVFRDMIEIGIAPDVVSYNALINGLCKAFKVSEAMLLYEEMQIRGCYPDEVTFKLIIGGLLREKKLSLACQGCWLTMKLESNGPHKHINHILMRLFICGTIGRSFGNCKIRSSFLGDLDQLFDFWCSIPCLHAYTYCLNSFHHPPHLGAGDHFRSQVGEALPGIKTTGIEDCTSPLH | 590 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 35015439 | 35018929 | + | CmPI595203_05g026390.1 | Cmu05g2639 | 417553 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmu05g2639 | 590 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 253 | 287 | IPR002885 | - | |
| Cmu05g2639 | 590 | Gene3D | Tetratricopeptide repeat domain | 122 | 232 | IPR011990 | GO:0005515(InterPro) | |
| Cmu05g2639 | 590 | Gene3D | Tetratricopeptide repeat domain | 233 | 319 | IPR011990 | GO:0005515(InterPro) | |
| Cmu05g2639 | 590 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 78 | 112 | IPR002885 | - | |
| Cmu05g2639 | 590 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 8 | 42 | IPR002885 | - | |
| Cmu05g2639 | 590 | Gene3D | Tetratricopeptide repeat domain | 2 | 108 | IPR011990 | GO:0005515(InterPro) | |
| Cmu05g2639 | 590 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 288 | 318 | IPR002885 | - | |
| Cmu05g2639 | 590 | Pfam | PPR repeat | 16 | 40 | IPR002885 | - | |
| Cmu05g2639 | 590 | Pfam | PPR repeat | 396 | 424 | IPR002885 | - | |
| Cmu05g2639 | 590 | Pfam | PPR repeat family | 426 | 474 | IPR002885 | - | |
| Cmu05g2639 | 590 | Pfam | PPR repeat family | 322 | 370 | IPR002885 | - | |
| Cmu05g2639 | 590 | Pfam | PPR repeat family | 221 | 266 | IPR002885 | - | |
| Cmu05g2639 | 590 | Pfam | PPR repeat family | 112 | 161 | IPR002885 | - | |
| Cmu05g2639 | 590 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 392 | 426 | IPR002885 | - | |
| Cmu05g2639 | 590 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 357 | 391 | IPR002885 | - | |
| Cmu05g2639 | 590 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 148 | 182 | IPR002885 | - | |
| Cmu05g2639 | 590 | Pfam | PPR repeat | 284 | 315 | IPR002885 | - | |
| Cmu05g2639 | 590 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 113 | 147 | IPR002885 | - | |
| Cmu05g2639 | 590 | PANTHER | MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE | 11 | 419 | IPR050667 | - | |
| Cmu05g2639 | 590 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 322 | 356 | IPR002885 | - | |
| Cmu05g2639 | 590 | NCBIfam | pentatricopeptide repeat | 116 | 149 | IPR002885 | - | |
| Cmu05g2639 | 590 | NCBIfam | pentatricopeptide repeat | 429 | 463 | IPR002885 | - | |
| Cmu05g2639 | 590 | NCBIfam | pentatricopeptide repeat | 150 | 183 | IPR002885 | - | |
| Cmu05g2639 | 590 | NCBIfam | pentatricopeptide repeat | 396 | 428 | IPR002885 | - | |
| Cmu05g2639 | 590 | NCBIfam | pentatricopeptide repeat | 221 | 253 | IPR002885 | - | |
| Cmu05g2639 | 590 | NCBIfam | pentatricopeptide repeat | 324 | 358 | IPR002885 | - | |
| Cmu05g2639 | 590 | NCBIfam | pentatricopeptide repeat | 290 | 320 | IPR002885 | - | |
| Cmu05g2639 | 590 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 427 | 461 | IPR002885 | - | |
| Cmu05g2639 | 590 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 218 | 252 | IPR002885 | - | |
| Cmu05g2639 | 590 | Gene3D | Tetratricopeptide repeat domain | 419 | 487 | IPR011990 | GO:0005515(InterPro) | |
| Cmu05g2639 | 590 | Gene3D | Tetratricopeptide repeat domain | 320 | 389 | IPR011990 | GO:0005515(InterPro) |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmu05g2639 | - | - | - | - | 0.0 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi1g620 | . | . | . | . | . | . | Bma14g01828 | . | . | Cmo18g00756 | . | Cma18g00751 | . | Car18g00685 | . | Cpe09g00548 | . | Bhi07g01807 | . | . | . | . | . | . | Cla05g02598 | Cam05g2789 | Cec05g2827 | Cco05g2859 | Clacu05g2791 | Cmu05g2639 | Cre05g2755 | Cone13ag1092 | . | . | . | Lsi04g00608 | Csa05g02277 | Chy10g00843 | Cme10g00587 | . | . | Bda07g01644 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0006460 | 1 | 3 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 30 |