Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2663 ATGAATTCTCTTTTCCATATTCAAGAGTGGAAGTTTGTTGAACAATCCGGTTTATCTAGCGATCTAGACTCATCTTCTACCAAGTTTGGGCACTGCAAAGCCTTTGGCATTTCTGCTATTGTCACCAATGCAACATCGACATTTCCACAATCGAAACGACATTGCTTTGGGGAATCTGACCCTGGCGAATTTCCCTTAGCTGCTAATCCTTCCATTGTTCTTCATGTTCTGACGGCATGTAACTTGGATCCTCAAGACCTTGCAAAGTTAGAGGCGACATGTTCATTCTTTAGACAGCCTGCAAACTTTGCTCCTGACTATGAATTGTCAATTTCGGAGCTTGCTGCATTAGATATGTGCCAAAAGAGAGCCATATTCAAACCTATGACAGCAGAACAGCATCAAGCATTGAAGCAAAGATGTGGAGGTTCGTGGAAACTGGTATTGAGGTTTTTAGTGGCTGGAGAAACATGTTGCAGGAGGGAAAAATCCATGGCAATAGCAGGACCTGGTCACAGCATCGCTGTCACATCAAAAGGAGCTGTTTACTCCTTTGGATCCAACAGCTCTGGACAGCTTGGACATGGTACCACTGAAGAGGAATCACGGCCTCGCCTCATCAGATCCCTGCAAGGAATTCGAATAATTCAGGCAGCAGCAGGGGGCGGGAGGACAATGTTAATCAGCGACGCCGGGCATGTTTATGCATTTGGCAAGGATTCATTTGGTGAAGCTGAGTATGGTGCTCAAGGAGCTCAAGTTATTACTACACCAAAGTTGGTCGAATCCCTGAAGGATATATTTGTGGTGCAAGCTGCAATTGGAAATTTCTTCACTGCTGTATTATCAAGAGAAGGTAGGGTGTACACATTTTCTTGGGGGACTGACGGTAGGCTCGGTCATCATACCGAACCAAATGACTTGGAACCACGGCCCCTGATGGGAGCATTAGAAAACATTCCAGTTGTTCAAATTGCTGCTGGATATTGCTACCTTCTTGCTCTTGCTTGTCATCCTAGTGGCATGTCAGTATACTCAGTTGGGTGTGGACTGGGTGGGAAGCTCGGTCATGGTTCAAGGACCGATGAGAAACAGCCACGACTTATTGAACAATTTCAGCTTCTGAATCTCCAGCCAGTTGTGGTCGCGGCTGGTGCTTGGCATGCAGCTGTTGTAGGTCGCGATGGTCGAGTTTGTACATGGGGTTGGGGCCGATATGGGTGTCTGGGTCATGGAAATGAGGAATGTGAATCTTCCCCTAAGGTGGTGGAAGCATTAAGCAACGTTAAAGCAGTTCATGTTGCTACAGGAGATTATACAACATTCGTAGTATCTGATGATGGTGACGTGTATTCTTTCGGTTGTGGAGAATCCGCTAGTCTTGGACATAATATCGCCATCCCCGAGGAACAGGGGAATCGGCAACCTCACGTGTTAAGCCCAGAACTAGTCAGGTCTCTGAAGCAAATTAACGAACGGGTAGTTCAGATTAGCCTCACTAATTCAATTTACTGGAATGCACACACCTTTGCACTGACCGAGTCGGGGAAGTTGTATGCATTTGGAGCTGGAGACAAAGGGCAGCTCGGGGTCGAACTTCTGGCGAATCAAACCGAAAGGGGAAATCCAGAGCGAGTTGACATTGATCTGAATTAA 1656 46.5 MNSLFHIQEWKFVEQSGLSSDLDSSSTKFGHCKAFGISAIVTNATSTFPQSKRHCFGESDPGEFPLAANPSIVLHVLTACNLDPQDLAKLEATCSFFRQPANFAPDYELSISELAALDMCQKRAIFKPMTAEQHQALKQRCGGSWKLVLRFLVAGETCCRREKSMAIAGPGHSIAVTSKGAVYSFGSNSSGQLGHGTTEEESRPRLIRSLQGIRIIQAAAGGGRTMLISDAGHVYAFGKDSFGEAEYGAQGAQVITTPKLVESLKDIFVVQAAIGNFFTAVLSREGRVYTFSWGTDGRLGHHTEPNDLEPRPLMGALENIPVVQIAAGYCYLLALACHPSGMSVYSVGCGLGGKLGHGSRTDEKQPRLIEQFQLLNLQPVVVAAGAWHAAVVGRDGRVCTWGWGRYGCLGHGNEECESSPKVVEALSNVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGHNIAIPEEQGNRQPHVLSPELVRSLKQINERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGVELLANQTERGNPERVDIDLN 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35189542 35192841 - CmPI595203_05g026630.1 Cmu05g2663 417577

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2663 551 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 286 338 IPR000408 -
Cmu05g2663 551 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 516 551 IPR000408 -
Cmu05g2663 551 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 180 231 IPR000408 -
Cmu05g2663 551 Gene3D - 339 550 IPR009091 -
Cmu05g2663 551 Gene3D - 163 338 IPR009091 -
Cmu05g2663 551 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 342 395 IPR000408 -
Cmu05g2663 551 PRINTS Chromosome condensation regulator RCC1 signature 272 288 IPR000408 -
Cmu05g2663 551 PRINTS Chromosome condensation regulator RCC1 signature 443 464 IPR000408 -
Cmu05g2663 551 PRINTS Chromosome condensation regulator RCC1 signature 232 248 IPR000408 -
Cmu05g2663 551 PRINTS Chromosome condensation regulator RCC1 signature 182 198 IPR000408 -
Cmu05g2663 551 PRINTS Chromosome condensation regulator RCC1 signature 385 403 IPR000408 -
Cmu05g2663 551 PRINTS Chromosome condensation regulator RCC1 signature 288 302 IPR000408 -
Cmu05g2663 551 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 382 392 IPR000408 -
Cmu05g2663 551 Pfam Regulator of chromosome condensation (RCC1) repeat 285 334 IPR000408 -
Cmu05g2663 551 Pfam Regulator of chromosome condensation (RCC1) repeat 447 498 IPR000408 -
Cmu05g2663 551 Pfam Regulator of chromosome condensation (RCC1) repeat 343 392 IPR000408 -
Cmu05g2663 551 Pfam Regulator of chromosome condensation (RCC1) repeat 179 228 IPR000408 -
Cmu05g2663 551 Pfam Regulator of chromosome condensation (RCC1) repeat 232 282 IPR000408 -
Cmu05g2663 551 Pfam Regulator of chromosome condensation (RCC1) repeat 395 444 IPR000408 -
Cmu05g2663 551 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 448 515 IPR000408 -
Cmu05g2663 551 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 225 547 IPR051210 -
Cmu05g2663 551 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 396 447 IPR000408 -
Cmu05g2663 551 SUPERFAMILY RCC1/BLIP-II 164 464 IPR009091 -
Cmu05g2663 551 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 232 285 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2663 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2663 Cmu-Chr5:35189542 Cmu11g1809 Cmu-Chr11:30208200 1.40E-52 dispersed
Cmu05g2663 Cmu-Chr5:35189542 Cmu04g0836 Cmu-Chr4:22870110 3.70E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g590 . Blo16g01178 . Bda11g01299 Bpe13g01493 . Bma14g01836 . . Cmo18g00716 . Cma18g00729 . Car18g00678 Sed06g1714 Cpe09g00559 Cpe01g01582 Bhi07g01841 Tan04g0127 Cmetu10g0484 Lac13g0111 Hepe10g1560 . . Cla05g02623 Cam05g2811 Cec05g2847 Cco05g2878 Clacu05g2815 Cmu05g2663 Cre05g2779 Cone13ag1098 . . . Lsi04g00635 Csa05g02252 Chy10g00821 Cme10g00610 . Blo11g01031 Bda07g01651 Bda11g01299 . . . Bma06g00592 . . . Cma04g01795 . Car04g01809 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004026 2 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 4 1 1 44