Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2669 ATGGGGTTTCCTCTTTTTTGGGTTTTGATTCTTCTTCTCGTCGTTTCTTCTGTCTATTGTCAGGTTAAAGAGTTCATCAGTATAGATTGTGGAGGGACAAAGAATTTCACCGACCCAGTTACAGGGCTGGCATGGATTTCCGACGCCGGAATTATGAACGCCGGTGGGTCATCACCGGTGGAAAACCCAAATGGAAACTTGATGCAGTACCAAACACGGCGGGACTTTCCAATCGATGATAAGAAGTACTGCTACACTTTGAAAACAGAGGAAAGAAGAAGGTATTTGGTCCGAGCAACTTTTCAATATGGAAGTTTGAAGGATGAAGAAACTTACCCTAAATTTCAGCTCTATTTGGATGCAACTAAGTGGTCAACTGTAACCATTTTTGATGCTTCAAGAGTTTATGTGAAGGAGATGATCGTCAGAGCACCTTCAAATTCATTTGATGTTTGCATATGCTGTGCAACTACTGGTTCTCCATTCATATCCACTCTTGAGCTTCGCCCTTTTAATCTTTCAATGTATGCAACAGATTTTGAAGATAATTTCTTCTTGGAAGTTGCTGCTAGAGTGAATTTTGGTGCTTTAACCAAGGATGCGATAAGGTACCCAGATGATCCATATGACAGAATTTGGGATTCAGACCTTGAGAAGAGGCAGAATTATCTTGTGGGGGTGGCTCCAGGGACAGAAAGAATCAGCACTTTGAACAATATTAATGTAATGACAAGAGAATATCCACCTGTTAAAGTGATGCAGACTGCAGTTCTTGGCTCAAAAGGAGTGCTGAGCTACAGGTTGAATTTGGATGATTTTCCTGCCAATGCAAGAGCTTATGCATATTTTGCTGAGATTGAAGATTTGGGTTGGAACGAGACACGGAAGTTCAAATTGGAGGAACCTAACATTCCGGATTCGAGTAATGCAGTGGTGAATATTGCAGAGAATGCTAATGGGACCTATACTCTTTATGAACCAAGTTATATGAATGTGACTCTGAGTTTCGTGCTTTCATTCTCATTCGTCAAGACTCGAGATTCGACTCGTGGACCACTTTTGAATGCATTGGAAATTAGTAGATATGTTGAGATTGCTGCCAAGACTGATAGGCGAGATGAGTCTGTTGTGAATGTCTTCCGTAACGTGTCAGCAGAGAATGTTTGGTCAAATGAAGGTGATCCTTGTGTTCCAACAAGCTGGGAATGGGTGACTTGTTCTGCCACGCAACCACCGAGAATAACTAAGATAGAGCTTTCCAGAAAGAATGTCAAGGGAGAAATTCCACCAGAGATCAATACTATGGATGGGTTAATGGAATTGTGGTTGGATGGAAATTCCCTTGCTGGACCACTGCCTGACATGAGTAATCTAATAAACTTGAAGATTTTACATCTAGAGAATAACAAATTGACAGGGACATTGCCTTCTTACCTGGGTAGTTTGCCCAACTTACAGGAATTATATATTCAAAACAATACGTTTTCGGGTGAAATACCTTCAGAATTATTGGCAAAGAAACTCATCTTTAAGTACGACGGTAACGTGGGGCTGCATAAAAGTGAACGATACAAGATGCATTCTAAGCTTATAGTAGGAGTTTCATTGGGAGTGCTTGTGCTTTTGATTATTCTACTTTTAGGAAGTTTGCTGTTACTCCGCAAGCTTCGAAGAAGAACAGCACCTTACCAGAAAAAAGGCGGTTCTCTGCAAATCAGCACCAAGCGCTCTTCTGGCTACTCGATTGGCAAGGGGGATGAAGGCATGGCCTACTATTTATCTCTCTCCGAGCTGGAAGAAGCGACGAATAACTTCTCTAAGAAAATTGGTAAAGGCAGCTTTGGATCAGTCTTTTATGGGAAGATGATTGACGGCAAAGAAGTGGCAGTTAAGATCATGGCCGAGTCATCTACACATGGGAATCAGCAATTTATGACTGAGGTTGCCCTCTTATCAAGAATTCATCACCGAAATTTGGTCCCTTTGATCGGGTACTGCGAAGAAGAACATCAACGGATCCTCGTTTACGAATATATGCATAATGGAACGTTGCGAGATCACTTATATGGTTCTACGACTCAAAAGCACTTGGATTGGCTGGCTCGGCTGCACATTGCAGAAGATGCAGCTAAAGGGCTTGAGTATTTGCACACGGGATGCAGCCCGAGTATCATTCATCGAGATGTAAAAACTAGCAACATACTCCTCGACATCAATATGAGGGCAAAGGTTTCCGACTTTGGACTCTCGAGGCAAGCCGAGGAAGATTTGACCCATGTATCAAGCGTTGCTCGAGGAACCGTAGGCTACTTGGATCCTGAGTACTATGCTTGTCAACAACTTACCGAAAAGAGCGATGTCTATAGTTTTGGGGTTGTGCTGCTCGAACTGATCTCTGGGAAGAAACCAGTCTCACCAGAAGACTATGGCAATGAATTGAACATTGTTCACTGGGCAAGGTCCCTGGTCCATAAAGGGGATGTGACGAGCATTGTAGATCCATTTTTAGAAGGAAAAGTCAAAATAGAATCGGTGTGGAGAATCGCTGAAGTTGCCATACAGTGTGTGCAGCAGCATGGAGTTTCCAGGCCAAGGATGCAGGAAGTCATCTTGGCCATACAAGATGCAATCAAGATCGAACAAGGTACTGAAGGAAACCAAAAGCTATCTTCAGGCAGTTTAAAAGCACAATCGTCTCGAAAAACTTTGCTGACCACCTTTCTTGAAATCGAGAGCCCTGACGGTTCCCTCCTTCCCTCTGCAAGATAA 2769 42.83 MGFPLFWVLILLLVVSSVYCQVKEFISIDCGGTKNFTDPVTGLAWISDAGIMNAGGSSPVENPNGNLMQYQTRRDFPIDDKKYCYTLKTEERRRYLVRATFQYGSLKDEETYPKFQLYLDATKWSTVTIFDASRVYVKEMIVRAPSNSFDVCICCATTGSPFISTLELRPFNLSMYATDFEDNFFLEVAARVNFGALTKDAIRYPDDPYDRIWDSDLEKRQNYLVGVAPGTERISTLNNINVMTREYPPVKVMQTAVLGSKGVLSYRLNLDDFPANARAYAYFAEIEDLGWNETRKFKLEEPNIPDSSNAVVNIAENANGTYTLYEPSYMNVTLSFVLSFSFVKTRDSTRGPLLNALEISRYVEIAAKTDRRDESVVNVFRNVSAENVWSNEGDPCVPTSWEWVTCSATQPPRITKIELSRKNVKGEIPPEINTMDGLMELWLDGNSLAGPLPDMSNLINLKILHLENNKLTGTLPSYLGSLPNLQELYIQNNTFSGEIPSELLAKKLIFKYDGNVGLHKSERYKMHSKLIVGVSLGVLVLLIILLLGSLLLLRKLRRRTAPYQKKGGSLQISTKRSSGYSIGKGDEGMAYYLSLSELEEATNNFSKKIGKGSFGSVFYGKMIDGKEVAVKIMAESSTHGNQQFMTEVALLSRIHHRNLVPLIGYCEEEHQRILVYEYMHNGTLRDHLYGSTTQKHLDWLARLHIAEDAAKGLEYLHTGCSPSIIHRDVKTSNILLDINMRAKVSDFGLSRQAEEDLTHVSSVARGTVGYLDPEYYACQQLTEKSDVYSFGVVLLELISGKKPVSPEDYGNELNIVHWARSLVHKGDVTSIVDPFLEGKVKIESVWRIAEVAIQCVQQHGVSRPRMQEVILAIQDAIKIEQGTEGNQKLSSGSLKAQSSRKTLLTTFLEIESPDGSLLPSAR 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35233172 35237855 - CmPI595203_05g026690.1 Cmu05g2669 417583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2669 922 SUPERFAMILY L domain-like 389 503 - -
Cmu05g2669 922 PANTHER OS07G0107800 PROTEIN-RELATED 455 879 - -
Cmu05g2669 922 Pfam Malectin-like domain 28 360 IPR024788 -
Cmu05g2669 922 SMART serkin_6 603 877 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g2669 922 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 679 886 - -
Cmu05g2669 922 ProSitePatterns Protein kinases ATP-binding region signature. 609 631 IPR017441 GO:0005524(InterPro)
Cmu05g2669 922 Pfam Leucine Rich repeats (2 copies) 460 496 IPR025875 -
Cmu05g2669 922 ProSiteProfiles Protein kinase domain profile. 603 877 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g2669 922 Gene3D Ribonuclease Inhibitor 373 511 IPR032675 -
Cmu05g2669 922 ProSitePatterns Serine/Threonine protein kinases active-site signature. 724 736 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g2669 922 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 407 505 - -
Cmu05g2669 922 Gene3D Phosphorylase Kinase; domain 1 582 678 - -
Cmu05g2669 922 FunFam receptor-like serine/threonine-protein kinase NCRK 582 678 - -
Cmu05g2669 922 Gene3D Transferase(Phosphotransferase) domain 1 679 896 - -
Cmu05g2669 922 SUPERFAMILY Protein kinase-like (PK-like) 587 870 IPR011009 -
Cmu05g2669 922 Pfam Protein tyrosine and serine/threonine kinase 605 870 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1542 Cmu-Chr5:24239520 Cmu05g2669 Cmu-Chr5:35233172 1.30E-66 dispersed
Cmu05g2669 Cmu-Chr5:35233172 Cmu07g1324 Cmu-Chr7:28541493 1.20E-117 dispersed
Cmu06g0584 Cmu-Chr6:6535364 Cmu05g2669 Cmu-Chr5:35233172 6.70E-43 dispersed
Cmu07g0467 Cmu-Chr7:5062294 Cmu05g2669 Cmu-Chr5:35233172 7.20E-61 dispersed
Cmu11g0505 Cmu-Chr11:5497355 Cmu05g2669 Cmu-Chr5:35233172 4.50E-59 dispersed
Cmu05g2669 Cmu-Chr5:35233172 Cmu10g2779 Cmu-Chr10:34395656 8.10E-242 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75575 PF12819 Malectin_like 3.70E-86 CL0202 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2669 - - - 0.0