Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2678 ATGGACATTCCTTCTATAATCGTAAATGCTTTGTTTATTTTTGCATTCTTGATGTGGGTTTTGCTTAACTCGTGTAAACGAGAGGTAGAGAGTGATTCCCTTCAGTCGAGAGACAGAGCATTTCGAGAGTTTAAATCGGTAATCAGCATTACTATATTTTGTAATGCTGTTATTCCATTTTGGAATTCCGGGTTTGTTGCGTATCAGTACTGGAATCATGGAATCGTTTGTGGGGAATCAGCAATTTCTGCTTTAACGTGGATTTTGGCTGCTGCGATTGCTTTTTACTGGAGAAACGGAATGTATTATCAAGGCAAAAAATGGCCGTTGATTCTAATTGTTTGGTGGGTTTTCTCGTGTGTTTATGGGTTATGTTCTTCGATTATTTACCTGCTGACCCACTTGAAATCTATGGAGTTTCCTCATTTTCTTCCAAAAGCTACTATTGTAGATTTTGCTTCATTCACTTTGTCTTTGATTATCTGTTGTACGGCACTGACTGTTAACTATTCCAAGAAACATAATGATCTTGAGAAGTCATTGCTCCAAAAAGACAATGATTGTTCTTCCGAAAATGATGGTGGTTTCATCAGTCCTGGATTATGGAGTCGAATTACATTCCAATGGCTGAATCCTCTCTTCAAAAGGGGGAGGAATCAGAAACTTGAATTAGCTCATGTTCCTTGTGTACCTCAACCTGAAACAGCTGAATATGCTTCTTCATTGCTAGAAGAATCACTTCAGAGAAAGAAAGTTGAATCTTCTTCCTTGCCCAAAGCTATAGTTCTAGCGACGTGGAAATTTCTGGTCTTAACTGCAATTTTTGCAGGATTCAACACATTCGCATCCTTTATGGGGCCTTTCCTAATCACCAACTTTGTGAATTATCTGTTGGGAAAAAGTGATGACTCAAGCAACCGTGATGGGTTGATTCTTGCATTCTTCTTCTTCTTTGCTAAGACATTGGAGTCTCTTACTCAAAGACAATGGTATTTTGGCACTCACCGTGTCGGTATACAGGTAAGGGCAGCTCTTACAGTGATGATCTACAAGAAATCTATATCTATTAATGCTGCTGGTCCAGGTAATGGTAAAATCATAAATCTAATAAATGTGGATGTTGAAAGAATTGGAGACTTCTCGTGGTATATTCACAAGATTTGGTTGCTTCCTGTTCAAATAGCTCTAGCCCTTATCATCCTTTACAGGAATCTTGGAGCTGCTCCTTCCATTACTGCTCTTTTAGCCACAATATTTATAATGGTGAGCAACACACCTTTGGCCAATGTTCAAGAAAGTCTACACTCAAAGATAATGGATGCAAAGGACTCTAGAATCAAATTGACATCAGAGACTCTAAAGAACGTGAGAGTCTTGAAACTGCATTCTTGGGAACAGACATTTTTGAAGAAGGTCTTGAAACTTCGAGAAGTTGAAAGAAGCTGGTTGAAGAGATACCTCTATACGTGCTCCGTTATAGCATTTCTCTTTTGGGTTTCACCAACTTTAGTTTCAGTCGTTACTTTTGGCGCCTGTGTTATGATGAAAATCCCTCTAACAGCAGGCACAGTTCTATCAGCCATTGCTACTTTTCGTATCCTACAAGAGCCAATTTATAACCTACCAGAGCTAATTTCCATGATCGCTCAAACAAAAGTTTCCCTTGACCGTATACAAGAGTTCATTCGAGAAGAAGACCAAAGGAAGCAGATTTATTATCCTCCTTCGAATGCATCAGACGTCGCGATTGAAATCGAGGTCGGGGAGTATTCGTGGGAAGCTAGTGATCTAAATTTTAAGAAACCAACTATAAAAGTTGCAGAGAAGATGCAAATACCAAAGGGTTACAAGGTTGCAGTCTGTGGATCAGTTGGTTCAGGAAAATCAAGCCTACTTTGTAGTATACTGGGTGAGATCCCACAGGTCTCAGGAACACAAATGAAAGTACATGGAACTAAAGCTTATGTTCCCCAAAGTGCTTGGATCCAATCAGGCACTGTAAGAGAGAATGTGCTGTTTGGGAAAGAGATTGACAAACATTTTTATGAGGATGTGTTAGAAGCCTGTGCTTTGAATCAGGATATCAAGTTGTGGCTGGATGGAGATTGTACTTTGTTGGGAGAGAGGGGGTTGAACTTAAGTGGAGGGCAAAAGCAGAGGATTCAATTGGCAAGGGCAGTCTATAGTGATGCAGATGTTTATTTCCTGGACGATCCTTTTAGTGCTGTGGACGCATGTACCGGAACACATTTGTTCAAGAGATGTCTTTTGCAACTTCTGTCTAGTAAAACTGTGGTATATGCTACTCATCACTTGGAATTCATCGAAGCTGCAGATCTTGTTCTGGCAAGAAAGTATGCAGAATTAATGTCAGACTCAAACGGTGAACTTTCTAGGCACATTGCAGCTCATAGAAGATCATTGAATGGAGTTAAGCCATTCAAAGAAGATAAACCCCATCATAAAAGACCATGTAAGACACATCAGATAGAAGCTCTAGATGAAAATTTTTCACTATCCCTTGGGAATGTTGGCCACTCTGTAAGAACTCAAGAAGAGGAAACTCAAACCGGTCGTGTAAAGTGGAGTGTCTACTCAACCTTCATCACATCTGCTTATAAAGGAGCTCTTGTTCCTGTAATCCTTTTATGTCAAGTATTGTTTCAAATCCTTCAGATGGGCAGTAATTACTGGATTTCTTGGGCAACAGAAGTAGAAGGCAAGGTCAGCAGAGAGCAGTTGTTAGGGATCTTCGTTTTGATGTCCGGTGGGAGCTCCATCTTTATATTAGGCCGGGCCGTTTTGATGGCAACCATTGCTATTGAGACTGCACAAAGAATGTTTCTTGGAATGGTGACATCAATATTTGCAGCACCTATTTCATTTTTTGATGCCAAACCTTCAAGCCAAATCCTTAACAGGTCTTCTACTGATCAAGGCACCTTGGATACAGATATCCCTTATAGATTAGGAGGATTGGCTTTTGCACTCATTCAGCTGTTGAGTATCATCATCCTGATGTCCAAGGTTGCATGGCAACGGCATCACATCAATGTGACGTGCTTTGATCAGGGATATTACATCAGTACTGCCAGAGAACTAGCTAGAATGGTCGGGATTCGGAAGGCTCCAATTCTTCATCACTTTTCTGAAACAGTCGTAGGTGCAACAATTATCCGTTGTTTCAATCAAGAGGACCGTTTCTTGACAAAAATACTGAAGCTGGTTGATGATTATTCTCGTGTGGTTTTTCATAACTCAACTTCAATGGAATGGTTGTGCCTGAGGATCAATTTTCTTTTCGATGTTGTCTTCTTTCTCGCCCTTACCATCTTAGTGACCCTTCCTAGAACGGCAATTGATCCAAGCTTAGCAGGATTAGCAGCTACATATGGTTTGAACATGAATGTGCTTCAGGCTTGGGTAATATGGAATTTATGTAATGTGGAGAACAAAATGATATCTGTTGAGAGGATTCTTCAGTTTACTAACATTGCTTCTGAGGCGCCACCGGTTATCGAAGATTGTAGGCCAATGCCAGAATGGCCAAAGGAGGGAAAGATAGAACTTGAGAACCTTCATGTCCAATACCGTCCTAATCTTCCAGTGGTTCTCAAAGGGATCACTTGTACCTTCCCAAAAAAGAAGAAAATTGGAGTTGTTGGCAGGACAGGAAGTGGAAAATCCACCTTAATCCAAGCACTTTTTAGAGTGGTAGAGCCTTCTGCAGGAAGGATTCTCATTGATGGAGTTGACATTTGCAAAATTGGTCTACATGATCTGAGGTCCAAGTTGGGTATTATTCCACAAGACCCAACATTGTTCCAAGGAACCATGAGAACTAACCTAGACCCTTTGCAGCAACATACTGATCCAGAAATATGGGAGGTCCTTCACAAGTGTCGTTTTGCCGAGATCATCCGAACGGACCACGCGGTTCTTGAAGCACCAGTGGCTGAAGATGGAGAGAATTGGAGTGTGGGACAGCGGCAACTTGTTTGTCTGGCCAGAGTGCTCCTCAAAAAACGTAGGATTCTTGTGTTGGATGAGGCAACAGCTTCCATTGATACTGCAACAGAAAATATAATTCAGGAAACAATAAGAGAGGAGACTAATGGTTGTACCGTCATTACTGTGGCTCATCGAATACCAACAATTATCGATAACGATTTGGTTTTGGTTCTTGATGAAGGCAAGGTAATCGAGTACGATTCACCATCTCGATTACTCGAGAACAGTTCTTCTATGTTTTCAAAGTTGGTGACGGAATTCTTGAGTAGATCATCCAATAGTCACTCACAATCTATGGGGACTTTTGTCAATACCGACCCAAACTGA 4338 40.87 MDIPSIIVNALFIFAFLMWVLLNSCKREVESDSLQSRDRAFREFKSVISITIFCNAVIPFWNSGFVAYQYWNHGIVCGESAISALTWILAAAIAFYWRNGMYYQGKKWPLILIVWWVFSCVYGLCSSIIYLLTHLKSMEFPHFLPKATIVDFASFTLSLIICCTALTVNYSKKHNDLEKSLLQKDNDCSSENDGGFISPGLWSRITFQWLNPLFKRGRNQKLELAHVPCVPQPETAEYASSLLEESLQRKKVESSSLPKAIVLATWKFLVLTAIFAGFNTFASFMGPFLITNFVNYLLGKSDDSSNRDGLILAFFFFFAKTLESLTQRQWYFGTHRVGIQVRAALTVMIYKKSISINAAGPGNGKIINLINVDVERIGDFSWYIHKIWLLPVQIALALIILYRNLGAAPSITALLATIFIMVSNTPLANVQESLHSKIMDAKDSRIKLTSETLKNVRVLKLHSWEQTFLKKVLKLREVERSWLKRYLYTCSVIAFLFWVSPTLVSVVTFGACVMMKIPLTAGTVLSAIATFRILQEPIYNLPELISMIAQTKVSLDRIQEFIREEDQRKQIYYPPSNASDVAIEIEVGEYSWEASDLNFKKPTIKVAEKMQIPKGYKVAVCGSVGSGKSSLLCSILGEIPQVSGTQMKVHGTKAYVPQSAWIQSGTVRENVLFGKEIDKHFYEDVLEACALNQDIKLWLDGDCTLLGERGLNLSGGQKQRIQLARAVYSDADVYFLDDPFSAVDACTGTHLFKRCLLQLLSSKTVVYATHHLEFIEAADLVLARKYAELMSDSNGELSRHIAAHRRSLNGVKPFKEDKPHHKRPCKTHQIEALDENFSLSLGNVGHSVRTQEEETQTGRVKWSVYSTFITSAYKGALVPVILLCQVLFQILQMGSNYWISWATEVEGKVSREQLLGIFVLMSGGSSIFILGRAVLMATIAIETAQRMFLGMVTSIFAAPISFFDAKPSSQILNRSSTDQGTLDTDIPYRLGGLAFALIQLLSIIILMSKVAWQRHHINVTCFDQGYYISTARELARMVGIRKAPILHHFSETVVGATIIRCFNQEDRFLTKILKLVDDYSRVVFHNSTSMEWLCLRINFLFDVVFFLALTILVTLPRTAIDPSLAGLAATYGLNMNVLQAWVIWNLCNVENKMISVERILQFTNIASEAPPVIEDCRPMPEWPKEGKIELENLHVQYRPNLPVVLKGITCTFPKKKKIGVVGRTGSGKSTLIQALFRVVEPSAGRILIDGVDICKIGLHDLRSKLGIIPQDPTLFQGTMRTNLDPLQQHTDPEIWEVLHKCRFAEIIRTDHAVLEAPVAEDGENWSVGQRQLVCLARVLLKKRRILVLDEATASIDTATENIIQETIREETNGCTVITVAHRIPTIIDNDLVLVLDEGKVIEYDSPSRLLENSSSMFSKLVTEFLSRSSNSHSQSMGTFVNTDPN 1445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35298663 35304627 + CmPI595203_05g026780.1 Cmu05g2678 417592

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2678 1445 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 585 811 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu05g2678 1445 CDD ABCC_MRP_domain1 583 782 - -
Cmu05g2678 1445 Gene3D ABC transporter type 1, transmembrane domain 844 1169 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cmu05g2678 1445 Gene3D ABC transporter type 1, transmembrane domain 244 564 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cmu05g2678 1445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 609 782 IPR027417 -
Cmu05g2678 1445 Pfam ABC transporter transmembrane region 270 537 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cmu05g2678 1445 Pfam ABC transporter transmembrane region 881 1115 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cmu05g2678 1445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1179 1417 IPR027417 -
Cmu05g2678 1445 ProSitePatterns ABC transporters family signature. 713 727 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu05g2678 1445 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1188 1422 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu05g2678 1445 Gene3D - 565 813 IPR027417 -
Cmu05g2678 1445 CDD ABC_6TM_ABCC_D1 271 558 IPR044746 GO:0140359(InterPro)
Cmu05g2678 1445 FunFam ABC transporter C family member 5 843 1169 - -
Cmu05g2678 1445 FunFam ABC transporter C family member 3 1171 1423 - -
Cmu05g2678 1445 SUPERFAMILY ABC transporter transmembrane region 265 566 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cmu05g2678 1445 FunFam Multidrug resistance-associated protein 4 568 829 - -
Cmu05g2678 1445 CDD ABC_6TM_ABCC_D2 878 1163 IPR044726 GO:0140359(InterPro)
Cmu05g2678 1445 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 270 550 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cmu05g2678 1445 FunFam ABC transporter C family member 10 253 566 - -
Cmu05g2678 1445 CDD ABCC_MRP_domain2 1186 1406 - -
Cmu05g2678 1445 Pfam ABC transporter 610 740 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu05g2678 1445 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 198 1421 IPR050173 GO:0016020(PANTHER)|GO:0042626(PANTHER)|GO:0055085(PANTHER)
Cmu05g2678 1445 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 880 1151 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cmu05g2678 1445 SUPERFAMILY ABC transporter transmembrane region 878 1170 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cmu05g2678 1445 Gene3D - 1172 1424 IPR027417 -
Cmu05g2678 1445 SMART AAA_5 614 788 IPR003593 GO:0016887(InterPro)
Cmu05g2678 1445 SMART AAA_5 1214 1405 IPR003593 GO:0016887(InterPro)
Cmu05g2678 1445 Pfam ABC transporter 1205 1353 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2678 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2678 Cmu-Chr5:35298663 Cmu09g2009 Cmu-Chr9:36184849 0.00E+00 dispersed
Cmu05g2678 Cmu-Chr5:35298663 Cmu05g0295 Cmu-Chr5:2497784 0.00E+00 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1141 . . . . . . . . Cmo04g01910 Cmo18g00707 . Cma18g00720 . Car18g00666 . Cpe09g00569 Cpe01g01598 Bhi07g01868 . . Lac13g0089 Hepe10g1543 . . Cla05g02633 . Cec05g2863 Cco05g2895 Clacu05g2831 Cmu05g2678 . . . . . Lsi04g00654 . . Cme10g00632 Blo06g00821 Blo11g00984 . . . . . . . . . Cma04g01814 . Car04g01826 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006115 0 1 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 3 2 1 1 2 1 1 1 1 1 2 3 1 38