Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2681 ATGGATTCAAATTCAAAGAAATCCAACAAAATCAGAGACATCGTACGGCTTCAACAGATCCTGAAGAAATGGCGGAAGCTAGCGAACTCGTCGAAGACGGCCAACAAAATCTCCGGCACGGCGGCAGGACCTGCCGGAAAGAGCATAAAGTTTCTGAAACGGACGTTATCATCGGCCGGTGGGGAAAGCTGCGGCGGCGCAGTACCAAAAGGCTATTTGGCGGTGAGCGTGGGGGAGGAGCAAAAGCGATTTGTGATACCGACGCAGTATTTAGGGCATCCGGCTTTTGAGATTCTGTTAAGAGAAGCGGAGGAGGAGTTCGGATTTCAACAAACGGGGGTTTTGAGGCTGCCGTGTGAAGTAACGGTGTTTGAAAATGTGGTGAAATTGGTGGAGGAAAAGAAGAAAGGGGACTTGTTGTTAGGGGGAGAAGAGGTTTTGAGTTTTTGTTCATTGGAAACGCTGCAGTTAACGCCGTCGCACCGTCCGCAGAGTCCAATGTGCAGATAG 510 50.0 MDSNSKKSNKIRDIVRLQQILKKWRKLANSSKTANKISGTAAGPAGKSIKFLKRTLSSAGGESCGGAVPKGYLAVSVGEEQKRFVIPTQYLGHPAFEILLREAEEEFGFQQTGVLRLPCEVTVFENVVKLVEEKKKGDLLLGGEEVLSFCSLETLQLTPSHRPQSPMCR 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35333587 35334096 + CmPI595203_05g026810.1 Cmu05g2681 417595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2681 169 Pfam Auxin responsive protein 16 130 IPR003676 GO:0009733(InterPro)
Cmu05g2681 169 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 17 130 IPR003676 GO:0009733(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g1052 Cmu-Chr4:25074263 Cmu05g2681 Cmu-Chr5:35333587 1.20E-13 dispersed
Cmu05g2681 Cmu-Chr5:35333587 Cmu11g0002 Cmu-Chr11:393671 3.50E-18 dispersed
Cmu05g2681 Cmu-Chr5:35333587 Cmu05g1893 Cmu-Chr5:28867763 6.00E-18 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2681 K14488 - csv:101216710 273.092