Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2688 ATGTGGTTACCAAGATACAGCTTAGAAAGAAAAGAGAGATTGAATGTGAATGGATTTGTGGCAGTGGCAATTGATAAAGACAAAGGAAGCCAAGGAGCTCTCAAATGGGCGATTGATCATTTGCTTCAAAGAGGACACACTATTTTCCTCATCCATGTCAAACTCAGATCTCCTTCTAATTCTTCCCAAAAGATGAGTTTGAAATCTGACTCTGAATCCAGTGTCAAAGAATTATTCCTTCCTTTTCGTTGCTTTTGTACTCGTAAGGATATACAATGCAAAGATGTTGTGTTGGAAGATACAGATGTAGCAAAGGCCATAATTGAGTATGCTGCAAATACAGCCATAGAGAACATTGTCGTGGGTGCTTCAGCAAAATCTGGCTTCTTAAGATTCAAGGCAACTGATGTTCCTGGCAGTGTAGTGAAAGGAGCACCAGATTTTTGTAATGTGTTTGTCATTTCTAAAGGAAAAATCCAATCGATGCGTTCGGCATCTCGTCCTGCTCCACCGGTAACTGCTCTACGAGGTCAATTAGCGCAACAGTCCAGCGCAAAATCAGATATGCCTGACTTCCCTGTCTCTCACTCTGCAAGTGCAAGAGCGTCTTTGGATAAGCCACCACTTGATCTGCCTAGTAAATCACAAGACGAGGCCGATTTCATGAGGTCCCCATTCACAAGGAAAGGATATAACTACAAAGCATCATATGGAGATTTGTCTATGCAAGATTCAGATATATCTTACGTTAGCTCGGGAAGACCGAGCATCGATCGTATATTTCCTTCACTTTATGACAGTCAAGATATGGGAGGAAGAGCCACACCACCACAGATTTCAAGCAGTACAGATCTTGACTTGACTCGCAGCTTTGAGTCTCTGCAGTTGGGACGGATGTCGGTGGATATGAACTTTCCGTCTGAGTTCTCTTCGATCTCACAAGATAGTGACAGAATGTCTATCTCATCACAGTCTATGGAAGATGTAGAGGCCGAGATGCGGAGGCTGAAGCTAGAACTCAAGCAAACCATGGAAATGTACAGTACAGCCTGCAAGGAAGCTCTTACAGCAAAACAAAAGGCGATCGAGCTACAACGCTGGAAACTAGAAGAAGAACAAAGATTAGAAGAGGCAAGATTGGCGGGGGAAGCTGCATTGGCACTAGCCGAACAAGAGAAGGCGAAGTCGAAAGCAGCAATTGAGGCAGCTGAAGCAGCTAGAAGAATTGCAGAATTGGAAGCACAGAAAAGAATGAAGGCTGAAATGAAAGCACTCAAAGAAGCTGAAGAGAAGAAAAAGGCATTTGATGCATTGGCACAAAATGATATCAGGTATAGAAAGTATACGATCGAGGAGATCGAAGAGGCAACAGAGTTCTTTTCCGAATCTCGTAGGATCGGAGAAGGAGGATATGGTCCTGTTTACAAGTGTGATCTTGATCATACTCCTGTTGCCATTAAGGTTCTACGTCCCGATGCGACTCAAGGACGATCTCAGTTTAAACAAGAGGTAGAAGTACTCAGCTGTATACGTCATCCAAACATGGTTCTCCTCCTTGGAGCTTGCCCCGAGTACGGCTGCTTGGTCTATGAGTTCATGGCTAATGGGAGCTTAGAAGACCGACTTCTGCGACGAGGAAACACGCCTCCACTTTCATGGCAACTTAGGTTTAAAATTGCAGCTGAAATTGGAACAGCATTGTTGTTCTTGCACCAAACAAAGCCAGAGCCTCTTGTGCATCGCGATCTCAAACCAGCTAACATTCTGCTCGATCGTAACTTTGTTAGTAAGATCAGTGATGTTGGCTTGGCTAGGCTTGTACCGCCATCCATTGCCGATAGCGTAACACAATATCGAATGACATCAACTGCTGGAACATTTTGCTACATTGATCCAGAGTATCAACAAACAGGTATGCTTGGTGTGAAATCCGACATATACTCGCTAGGCATCATGTTTCTCCAACTTATAACTTCTAGGCCGCCAATGGGATTAACTCACCATGTCGAAAGAGCTATCGAGAAGGGAACGTTCAAAAATATTCTCGATCCAGCTGTCCCTGATTGGCCTATTGAAGAAGCTTTGTCTTTCGCCAAGTTGTCACTCAAGTGCGCCGAGTTAAGACGTAAAGATAGGCCAGATCTTGGGAAGGTCATCCTTCCAGAGCTTAACAGGTTGAGAATTATTGCAGAAGAAACAATGCATCCAACACTGATGGGAGATATAAGCCCTTCTCGCAGCAGCAGTCAAGTTTCTTTTCAGTTGGGAGCAATGGCTTCATCTCCGCAATCATACAACAGCTCGAGAAATCCATCGGCTAATTTTTGA 2328 44.03 MWLPRYSLERKERLNVNGFVAVAIDKDKGSQGALKWAIDHLLQRGHTIFLIHVKLRSPSNSSQKMSLKSDSESSVKELFLPFRCFCTRKDIQCKDVVLEDTDVAKAIIEYAANTAIENIVVGASAKSGFLRFKATDVPGSVVKGAPDFCNVFVISKGKIQSMRSASRPAPPVTALRGQLAQQSSAKSDMPDFPVSHSASARASLDKPPLDLPSKSQDEADFMRSPFTRKGYNYKASYGDLSMQDSDISYVSSGRPSIDRIFPSLYDSQDMGGRATPPQISSSTDLDLTRSFESLQLGRMSVDMNFPSEFSSISQDSDRMSISSQSMEDVEAEMRRLKLELKQTMEMYSTACKEALTAKQKAIELQRWKLEEEQRLEEARLAGEAALALAEQEKAKSKAAIEAAEAARRIAELEAQKRMKAEMKALKEAEEKKKAFDALAQNDIRYRKYTIEEIEEATEFFSESRRIGEGGYGPVYKCDLDHTPVAIKVLRPDATQGRSQFKQEVEVLSCIRHPNMVLLLGACPEYGCLVYEFMANGSLEDRLLRRGNTPPLSWQLRFKIAAEIGTALLFLHQTKPEPLVHRDLKPANILLDRNFVSKISDVGLARLVPPSIADSVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMFLQLITSRPPMGLTHHVERAIEKGTFKNILDPAVPDWPIEEALSFAKLSLKCAELRRKDRPDLGKVILPELNRLRIIAEETMHPTLMGDISPSRSSSQVSFQLGAMASSPQSYNSSRNPSANF 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35385732 35390279 + CmPI595203_05g026880.1 Cmu05g2688 417602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2688 775 SUPERFAMILY Protein kinase-like (PK-like) 443 718 IPR011009 -
Cmu05g2688 775 MobiDBLite consensus disorder prediction 176 190 - -
Cmu05g2688 775 ProSitePatterns Serine/Threonine protein kinases active-site signature. 578 590 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g2688 775 ProSiteProfiles Protein kinase domain profile. 460 738 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g2688 775 Gene3D Transferase(Phosphotransferase) domain 1 533 736 - -
Cmu05g2688 775 Coils Coil 352 372 - -
Cmu05g2688 775 SMART serkin_6 460 729 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g2688 775 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 432 532 - -
Cmu05g2688 775 Pfam Universal stress protein family 20 146 IPR006016 -
Cmu05g2688 775 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 20 154 - -
Cmu05g2688 775 CDD STK_N 20 157 - -
Cmu05g2688 775 FunFam U-box domain-containing protein 51 533 733 - -
Cmu05g2688 775 PANTHER OS02G0152300 PROTEIN 20 745 IPR051348 -
Cmu05g2688 775 Coils Coil 319 346 - -
Cmu05g2688 775 Gene3D Phosphorylase Kinase; domain 1 438 532 - -
Cmu05g2688 775 MobiDBLite consensus disorder prediction 164 222 - -
Cmu05g2688 775 Gene3D HUPs 20 154 IPR014729 -
Cmu05g2688 775 Coils Coil 386 438 - -
Cmu05g2688 775 Pfam Protein kinase domain 461 714 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0464 Cmu-Chr2:4211956 Cmu05g2688 Cmu-Chr5:35385732 7.30E-243 dispersed
Cmu05g2688 Cmu-Chr5:35385732 Cmu08g1193 Cmu-Chr8:24359784 2.10E-296 dispersed
Cmu05g2688 Cmu-Chr5:35385732 Cmu08g0944 Cmu-Chr8:21775898 3.20E-207 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75577 PF00069 Pkinase 5.30E-39 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2688 - - - 0.0