Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu05g2698 | ATGGCGGTCGATCTGATGAGCTTTCCAAAGATGGATGATCAAATGGCTATACAGGAGGCTGCATCGCAAGGATTGAAGAGTATGGAGCATTTGATTCGTCTTCTTTCTCACAAGCAACCCTCAAGCCATGTTGATTGCTCTGATTTAACTGATGCAACCGTTTCCAAGTTCAAGAAAGTGATCTCTCTCCTCAATCGGACCGGTCACGCTAGATTCCGGCGAGGTCCGGTTTCTTCGACATCCTCGTCGTCGTGCGGTTCATCTGCTCATCTCTCTTTTCCTCAAAATCAGGCGATGAATCTCACTCCTACTTCGTTTACTTCACCGGCCGCGGTTCCTGCTCCGCCGTTCACCGCTCCGGCTTCCGTGGCTCAGCCACAGGCGAAAGTCGTCGCTGCGGCGGCGAACATCCTTCAGTCGCAGCCTCAGAGCATGACTCTCGATTTCACTAGGCCGAATATTTTGAACTCAAATCCTAAGGGAACCGATTTGGAATTTTCTAAGGAGACCTTCAGCGTCTCGTCCAGCTCCTCGTTTATGTCCTCAGCCATCACCGGAGACGGAAGCGTATCCAACGGAAAGTTAGGAAAGTCGATCTTCTTAGCACCAGCGCCGACTGCTTCCGGTGGTAAGCCGCCGCTCTCGGCGGCGCCTTACAAGAAGAGGTGTCACGAACACGATCATTCCGAAGATTTGTCTGGAAAATTCTCCGGGTCAACATCTGCTTCCGGCAAATGCCATTGCTCAAAGAGAAGAAAAAATCGTACGAAGAAGACGATTCGAGTCCCAGCGATTAGTTCAAAAATCGCAGATATTCCACCGGACGAGTACTCGTGGAGGAAGTATGGTCAGAAGCCGATCAAAGGATCTCCATACCCACGGGGATATTACAAATGTAGCACGATGAGGGGATGTCCGGCGAGGAAACACGTGGAGAGAGATCCGAACGATCCGGCGATGTTGATTGTAACGTACGAAGGGGAGCACCGCCATACGCAGAGCTCGTTGCCGGAAAATATGGCGGCTGGTGTAGCTTTAGTTTTTGAGTCAACTTGA | 1056 | 50.95 | MAVDLMSFPKMDDQMAIQEAASQGLKSMEHLIRLLSHKQPSSHVDCSDLTDATVSKFKKVISLLNRTGHARFRRGPVSSTSSSSCGSSAHLSFPQNQAMNLTPTSFTSPAAVPAPPFTAPASVAQPQAKVVAAAANILQSQPQSMTLDFTRPNILNSNPKGTDLEFSKETFSVSSSSSFMSSAITGDGSVSNGKLGKSIFLAPAPTASGGKPPLSAAPYKKRCHEHDHSEDLSGKFSGSTSASGKCHCSKRRKNRTKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERDPNDPAMLIVTYEGEHRHTQSSLPENMAAGVALVFEST | 351 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 35481369 | 35483011 | + | CmPI595203_05g026980.1 | Cmu05g2698 | 417612 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu05g2698 | 351 | Pfam | WRKY DNA -binding domain | 275 | 331 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu05g2698 | 351 | SMART | WRKY_cls | 273 | 333 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu05g2698 | 351 | SUPERFAMILY | WRKY DNA-binding domain | 271 | 333 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu05g2698 | 351 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 16 | 334 | IPR044810 | GO:0003700(InterPro) | |
Cmu05g2698 | 351 | Pfam | Plant zinc cluster domain | 220 | 271 | IPR018872 | - | |
Cmu05g2698 | 351 | FunFam | WRKY transcription factor 65 | 257 | 334 | - | - | |
Cmu05g2698 | 351 | Gene3D | WRKY domain | 252 | 326 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu05g2698 | 351 | ProSiteProfiles | WRKY domain profile. | 268 | 334 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu01g1650 | Cmu-Chr1:30234149 | Cmu05g2698 | Cmu-Chr5:35481369 | 1.10E-54 | dispersed | |
Cmu05g2698 | Cmu-Chr5:35481369 | Cmu06g1439 | Cmu-Chr6:25661251 | 1.80E-69 | dispersed | |
Cmu05g2698 | Cmu-Chr5:35481369 | Cmu05g2081 | Cmu-Chr5:30426329 | 2.50E-58 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6298 | PF03106 | WRKY | 6.70E-26 | CL0274 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu05g2698 | - | - | - | 0.0 |