Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2698 ATGGCGGTCGATCTGATGAGCTTTCCAAAGATGGATGATCAAATGGCTATACAGGAGGCTGCATCGCAAGGATTGAAGAGTATGGAGCATTTGATTCGTCTTCTTTCTCACAAGCAACCCTCAAGCCATGTTGATTGCTCTGATTTAACTGATGCAACCGTTTCCAAGTTCAAGAAAGTGATCTCTCTCCTCAATCGGACCGGTCACGCTAGATTCCGGCGAGGTCCGGTTTCTTCGACATCCTCGTCGTCGTGCGGTTCATCTGCTCATCTCTCTTTTCCTCAAAATCAGGCGATGAATCTCACTCCTACTTCGTTTACTTCACCGGCCGCGGTTCCTGCTCCGCCGTTCACCGCTCCGGCTTCCGTGGCTCAGCCACAGGCGAAAGTCGTCGCTGCGGCGGCGAACATCCTTCAGTCGCAGCCTCAGAGCATGACTCTCGATTTCACTAGGCCGAATATTTTGAACTCAAATCCTAAGGGAACCGATTTGGAATTTTCTAAGGAGACCTTCAGCGTCTCGTCCAGCTCCTCGTTTATGTCCTCAGCCATCACCGGAGACGGAAGCGTATCCAACGGAAAGTTAGGAAAGTCGATCTTCTTAGCACCAGCGCCGACTGCTTCCGGTGGTAAGCCGCCGCTCTCGGCGGCGCCTTACAAGAAGAGGTGTCACGAACACGATCATTCCGAAGATTTGTCTGGAAAATTCTCCGGGTCAACATCTGCTTCCGGCAAATGCCATTGCTCAAAGAGAAGAAAAAATCGTACGAAGAAGACGATTCGAGTCCCAGCGATTAGTTCAAAAATCGCAGATATTCCACCGGACGAGTACTCGTGGAGGAAGTATGGTCAGAAGCCGATCAAAGGATCTCCATACCCACGGGGATATTACAAATGTAGCACGATGAGGGGATGTCCGGCGAGGAAACACGTGGAGAGAGATCCGAACGATCCGGCGATGTTGATTGTAACGTACGAAGGGGAGCACCGCCATACGCAGAGCTCGTTGCCGGAAAATATGGCGGCTGGTGTAGCTTTAGTTTTTGAGTCAACTTGA 1056 50.95 MAVDLMSFPKMDDQMAIQEAASQGLKSMEHLIRLLSHKQPSSHVDCSDLTDATVSKFKKVISLLNRTGHARFRRGPVSSTSSSSCGSSAHLSFPQNQAMNLTPTSFTSPAAVPAPPFTAPASVAQPQAKVVAAAANILQSQPQSMTLDFTRPNILNSNPKGTDLEFSKETFSVSSSSSFMSSAITGDGSVSNGKLGKSIFLAPAPTASGGKPPLSAAPYKKRCHEHDHSEDLSGKFSGSTSASGKCHCSKRRKNRTKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERDPNDPAMLIVTYEGEHRHTQSSLPENMAAGVALVFEST 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35481369 35483011 + CmPI595203_05g026980.1 Cmu05g2698 417612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2698 351 Pfam WRKY DNA -binding domain 275 331 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g2698 351 SMART WRKY_cls 273 333 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g2698 351 SUPERFAMILY WRKY DNA-binding domain 271 333 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g2698 351 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 334 IPR044810 GO:0003700(InterPro)
Cmu05g2698 351 Pfam Plant zinc cluster domain 220 271 IPR018872 -
Cmu05g2698 351 FunFam WRKY transcription factor 65 257 334 - -
Cmu05g2698 351 Gene3D WRKY domain 252 326 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g2698 351 ProSiteProfiles WRKY domain profile. 268 334 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1650 Cmu-Chr1:30234149 Cmu05g2698 Cmu-Chr5:35481369 1.10E-54 dispersed
Cmu05g2698 Cmu-Chr5:35481369 Cmu06g1439 Cmu-Chr6:25661251 1.80E-69 dispersed
Cmu05g2698 Cmu-Chr5:35481369 Cmu05g2081 Cmu-Chr5:30426329 2.50E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6298 PF03106 WRKY 6.70E-26 CL0274 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2698 - - - 0.0