Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2702 ATGGGGTTTGACTGGAATGGCTGGCTGGCGATTGGCTGTGGTTTGAAGATGCAGACAGCAACTATAGCTGGAAACGGTAGAGCAGGACAAGCAACTCTTGAATTTCAAAGGGGGAGAAAAAAGATGGGTGATCTCGAGAATGATGAAATGGGTTTTAGGAATTCGAATGAAGGGTTAATGAATTGTCCATCAACAATGGCGATGGGGTCTTTCTATGGGTCGGGTTGGGATCCACTGGTTTCTTTAGGTCAAAGTGAGAATTTTGGGGCAGCTTCTTCAATGGTTTCCTCTCATGGCGAATTTTCCAATTCTTTTCCTGTTGTTTTGGAGAACCATGGAGGGAGTGGGACTGCACAACAAGGTGTTCAATATCCGACAGATTTGGAGATGAGTACGAAGTTGCCATGTTTTGGCAGTGGGAATTATTCAGACATGTTTGGTTCTTCTTTTGGTCTTGCTGGGCAGATTCTTGGTGGGTGTTCTTCAAATTACAGAAATGCACAAACATCACAAGAAAATTTACCATTATCTGGTGAAGAAACTGCTGTAGGATCACCAAATGGTAAAATCAGAAAACGAGCTCTTGATTCCACTTTCCCATTTAGTCCAAATAAGAAATCTGAAGTGAAATTGAAGAAGGATGTTTCTGGAGACAGTTCCAGTACACAAGAAGAGAAGAATGCAGAAATGGAGCAAAACTTAGGTGGGAATTCACGTGGTAAGGCAACTGGAAAACAAACTAAAGAAAAATCTAATAATAGTGCTGAAGCTCCTAAGGAAAATTACATTCATGTTCGAGCTAGAAGAGGGCAAGCCACAAACAGCCATAGCCTTGCTGAGAGGGTGAGGAGGGAGAAGATTAGTGAACGGATGAGATTGCTTCAAGAACTTGTTCCTGGATGCAATAAGATTACTGGGAAGGCTGTAATGCTTGATGAGATTATCAACTATGTTCAATCACTGCAACAGCAGGTTGAGTTTTTGTCAATGAAACTTGCTACTGTCAACCCGGACGTGAATATCGATATTGAGAGGATTTTATCCAAAGATATTTTCCACGCACGAGGCAGCAATGGAACTGTTCTTGGATTTGATCCCGGGTTGAGCGCTGTTTCCCCAGTCCCTCCTCACCGAATGTTTCAGTTTCAAGGGACGATGTCGAATATGGCAACCACATCCACACAGTTTCCTCCTTTGCCTCAGACAATGTTAGAAAGCGATATTCAAAGTCTTCTTCAAATGGGATTCGACTCGGGTTCGGCCCTTGACAATTTGGGACCAAACGGGCGGTTGAAACCAGAGCCCTAA 1308 43.2 MGFDWNGWLAIGCGLKMQTATIAGNGRAGQATLEFQRGRKKMGDLENDEMGFRNSNEGLMNCPSTMAMGSFYGSGWDPLVSLGQSENFGAASSMVSSHGEFSNSFPVVLENHGGSGTAQQGVQYPTDLEMSTKLPCFGSGNYSDMFGSSFGLAGQILGGCSSNYRNAQTSQENLPLSGEETAVGSPNGKIRKRALDSTFPFSPNKKSEVKLKKDVSGDSSSTQEEKNAEMEQNLGGNSRGKATGKQTKEKSNNSAEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDVNIDIERILSKDIFHARGSNGTVLGFDPGLSAVSPVPPHRMFQFQGTMSNMATTSTQFPPLPQTMLESDIQSLLQMGFDSGSALDNLGPNGRLKPEP 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35517306 35521033 - CmPI595203_05g027020.1 Cmu05g2702 417616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2702 435 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 269 336 IPR036638 GO:0046983(InterPro)
Cmu05g2702 435 MobiDBLite consensus disorder prediction 206 220 - -
Cmu05g2702 435 CDD bHLH_AtBPE_like 261 346 - -
Cmu05g2702 435 MobiDBLite consensus disorder prediction 194 281 - -
Cmu05g2702 435 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 271 321 IPR011598 GO:0046983(InterPro)
Cmu05g2702 435 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 137 397 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cmu05g2702 435 SMART finulus 277 327 IPR011598 GO:0046983(InterPro)
Cmu05g2702 435 Gene3D - 268 340 IPR036638 GO:0046983(InterPro)
Cmu05g2702 435 MobiDBLite consensus disorder prediction 221 251 - -
Cmu05g2702 435 Pfam Helix-loop-helix DNA-binding domain 274 322 IPR011598 GO:0046983(InterPro)
Cmu05g2702 435 FunFam Basic helix-loop-helix transcription factor 268 340 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2393 Cmu-Chr5:33161783 Cmu05g2702 Cmu-Chr5:35517306 3.00E-44 dispersed
Cmu05g2702 Cmu-Chr5:35517306 Cmu08g1611 Cmu-Chr8:27789836 1.90E-47 dispersed
Cmu05g2702 Cmu-Chr5:35517306 Cmu02g0518 Cmu-Chr2:4806900 7.40E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6299 PF00010 HLH 4.60E-06 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2702 - - - 0.0