Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2703 ATGGCTATGGAAGTTACTTCTGAGTCTCAGCAACATTCTCACTACCATTACCATAGCCAGGCAAGTTCAGCAGGAGTTGTCTCTAACACCATGTCAAATAGCTTCTTAGCTTCTCACCACTCCAATGGAGATTTTTATTTTTCTCCCTTGTCTGTAATGCCACTTAAGTCAGATGGGTCTCTTTGTATCATGGAATCAATCAGCGCATCACAACCTCAAGAAACATTGCCAAATATCTCACCAAAATTGGAGGACTTTCTTGGTGGTGCAACTCATGGAAAAGAGGCCACAACTCTAAGCTTAGACAACATATATTACAATCAAAATAATGAGGTTGATTCAGAGAGTCAACATTCTTTGGATCTTTTTAAGCAACAAGAGCAAATACATATTCTTTTTCATTCTCAGCGATATTATTCTGGACTACTCCAGTATCCTACTGAGGATCCTAACAAGGAGTCTCATATTGCAAGTTGTTATTCTGAAATTCAACAAGATATGGAGCAGCGGATAAATGGCTGCTGCTTTGGAGGGATGAATTGCCAAGATTTGCAGCCACTTAGCTTGTCCACGAGTCCTAGTTCTCAGTCTAGTTGTGTTACTGCTCCAAGCCAAATTTCTCAACCTGGACCAGCCACCATGGAAACAAAGAAAAGGGCTTTCGACAATCGAAAGCAGTCGGTCCATCGGAAGTCAATCGACACGTTCGGACAAAGAACTTCGCAGTACAGAGGTGTGACAAGGCATAGATGGACTGGTAGATATGAAGCTCATTTGTGGGACAATAGTTGTAAGAAGGAAGGTCAAACGAGGAAAGGAAGACAAGTGTATCTTGGTGGCTATGATATGGAGGAAAAAGCAGCAAGAGCTTATGATCTTGCAGCTCTCAAGTACTGGGGACCCTCAACACATTTAAACTTCCCGCTAAAGAACTATCAACTTCAAATTGAAGAAATGAAGAATATGAACCGTCAAGAATACGTTGCACACCTGAGAAGGAAAAGCAATGGATTCTCCAGGGGAGCTTCCATATACAGGGGAGTAACTAGACATCATCAACATGGGAGATGGCAAGCTCGAATCGGAAGAGTCGCAGGGAATAAAGACCTCTATCTTGGAACATTTGGCACACAAGAGGAAGCTGCAGAAGCATATGACATAGCAGCTATCAAGTTTCGCGGTGTAAATGCTATTACAAACTTCGACACGTCAAGGTACAATGTAGAAAGGATCATAGCAAGCAGTAGCCTCCTTTCAGGAGAGTTTGCGAGGCGAAACACAGAACAAAAACCAACCAACACCATCAAACATAAAGATCCAAAACAGAACATTGATAAAATTGATGATCCCTCGAAGATATCAAACAACTTGGACCGGAAGGTGGTATTCAACAACAACCCGATATTGGATCCAAGTGCAATGGTAATGGTGAATTTTTCAAGCAAGTACAAGGCTCACTTCCCCAATGCTTCCTCTGCTGTGAGCAGCAGCAGCAGCTCAAGGGAAACAAGTCCTGATAAGTGA 1524 42.39 MAMEVTSESQQHSHYHYHSQASSAGVVSNTMSNSFLASHHSNGDFYFSPLSVMPLKSDGSLCIMESISASQPQETLPNISPKLEDFLGGATHGKEATTLSLDNIYYNQNNEVDSESQHSLDLFKQQEQIHILFHSQRYYSGLLQYPTEDPNKESHIASCYSEIQQDMEQRINGCCFGGMNCQDLQPLSLSTSPSSQSSCVTAPSQISQPGPATMETKKRAFDNRKQSVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHLNFPLKNYQLQIEEMKNMNRQEYVAHLRRKSNGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGVNAITNFDTSRYNVERIIASSSLLSGEFARRNTEQKPTNTIKHKDPKQNIDKIDDPSKISNNLDRKVVFNNNPILDPSAMVMVNFSSKYKAHFPNASSAVSSSSSSRETSPDK 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35529319 35531840 - CmPI595203_05g027030.1 Cmu05g2703 417617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2703 507 CDD AP2 241 308 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2703 507 SMART rav1_2 242 314 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2703 507 SMART rav1_2 344 408 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2703 507 FunFam AP2-like ethylene-responsive transcription factor ANT 241 310 - -
Cmu05g2703 507 MobiDBLite consensus disorder prediction 424 452 - -
Cmu05g2703 507 SUPERFAMILY DNA-binding domain 343 403 IPR016177 GO:0003677(InterPro)
Cmu05g2703 507 ProSiteProfiles AP2/ERF domain profile. 242 308 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2703 507 CDD AP2 343 404 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2703 507 MobiDBLite consensus disorder prediction 430 452 - -
Cmu05g2703 507 Pfam AP2 domain 242 300 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2703 507 Pfam AP2 domain 345 394 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2703 507 Gene3D AP2/ERF domain 241 310 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2703 507 Gene3D AP2/ERF domain 344 404 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2703 507 ProSiteProfiles AP2/ERF domain profile. 344 402 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2703 507 PRINTS Ethylene responsive element binding protein signature 243 254 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2703 507 PRINTS Ethylene responsive element binding protein signature 384 404 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2703 507 MobiDBLite consensus disorder prediction 488 507 - -
Cmu05g2703 507 MobiDBLite consensus disorder prediction 195 229 - -
Cmu05g2703 507 FunFam AP2-like ethylene-responsive transcription factor 343 404 - -
Cmu05g2703 507 MobiDBLite consensus disorder prediction 1 20 - -
Cmu05g2703 507 MobiDBLite consensus disorder prediction 195 212 - -
Cmu05g2703 507 SUPERFAMILY DNA-binding domain 241 309 IPR016177 GO:0003677(InterPro)
Cmu05g2703 507 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 154 438 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1727 Cmu-Chr1:30967935 Cmu05g2703 Cmu-Chr5:35529319 7.20E-133 dispersed
Cmu05g2703 Cmu-Chr5:35529319 Cmu07g1382 Cmu-Chr7:29152551 1.40E-102 dispersed
Cmu05g2703 Cmu-Chr5:35529319 Cmu08g1610 Cmu-Chr8:27776424 4.90E-140 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6300 PF00847 AP2 1.10E-13 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2703 K09285 - csv:101212143 774.237