Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2712 ATGCCGATGTACCAGCCTTCCTGTCGGAGAAGAGAGCCCGATTCGGAGCTGGGTTTAGGTGGTGGTGGGCAAGTTCTTGATGTGGAAACCGCCGTGAAAGATGGTATTCTTGGTGGGGGTGGCGGTGGAGGCGGTGGGTTAATTTGCGAGGGTGGAATGACTGAGAAATTGGATCTGAAGGAGATAGTGGAGGAGCTTCAGAATATTGAGGTTCCTTCGGTGTTTATTTGCCCAATTTCATTGGAGCCAATGCGAGATCCTGTGACCCTTTGTACAGGACAGACCTACGAACGATCCAACATCTTGAAATGGTTCTCTCTTGGTCATATCACATGCCCCACCACAATGCAAGAGCTTTGGGATGATTCAATCACTCCCAATAACACTCTTAACCAACTCATTTACAGTTGGTTTTCCCAAAAGTATTTGGCCATGAAGAAGAGGTCTGAGGATGTGCAGGGGAGAGCTCTTGAGCTCTTAGACACATTGAAGAAGGTCAAGGGCCAAGCTAGAGTCCGAGCTTTGAAGGATCTTCGTCAAGTTGTAGCTTCAAATTCGGCAAAGAACACTGTGGAAGGCAACGGTGGTGTTGCTTTGATTTCCTCTTTGTTGGGTCCTTTTACATCGCACACGGTTGGCTCCGAAGCCATTGGGATTTTGGTGAACTTGGATCTCGATGCCGAGTCGAGGAGAAACCTTGTTCAACCTGCCAAGATTTCGTTAATGGTGGACATGTTGAACGAGGGATCCACAGATACCAAAATCAACTGCACAAGATTGATTGAAACATTGCTCGATGGGGATGATTGTGGAGCGAAAACTGTCTCGAGCTTAAGTCTCTTGGTTGGATTGTTAAGATTAATCAAAGAAAAGAAACACCCAAATGGTGTTCTTGCTGGGTTAAAGTTGCTAAAAGTTCTGTGCTCCCAAGAACCAGTGAGGAACTCAGTAGTGAGCATTGGGGCAATACCGCAATTGATCGAAATTCTCCCGAATTTCGACCCTGAGTGTTTGGAATTAGCCCTTCATGTATTGGACTCACTCTCATCCCTCTCAGAGGGCAGGGTGGCCTTGAAAGATTGCCCCAAAACCATTCCAAACTTAGTCAAATTGTTAATGAGAGTCTCAGAGAGCTGCACTCAGCTGGCTTTGTCAATCCTATGGGCAGTCTGTAAACTCGCCCCTGAAGAATGTGCATCCCAAGCTGTGGAAGCAGGTTTAGCAGCCAAGCTTCTTTTGGTGATTCAGAGCGGTTGCAACCCCGTTCTGAAACAACGCTCCGCCGAGCTTCTGAAGCTCTGCAGCTTAAATTACACAGCAACCCTATTCATATCCAAGTGTAAGCTTACAAGGACAATACAATAA 1365 46.74 MPMYQPSCRRREPDSELGLGGGGQVLDVETAVKDGILGGGGGGGGGLICEGGMTEKLDLKEIVEELQNIEVPSVFICPISLEPMRDPVTLCTGQTYERSNILKWFSLGHITCPTTMQELWDDSITPNNTLNQLIYSWFSQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRALKDLRQVVASNSAKNTVEGNGGVALISSLLGPFTSHTVGSEAIGILVNLDLDAESRRNLVQPAKISLMVDMLNEGSTDTKINCTRLIETLLDGDDCGAKTVSSLSLLVGLLRLIKEKKHPNGVLAGLKLLKVLCSQEPVRNSVVSIGAIPQLIEILPNFDPECLELALHVLDSLSSLSEGRVALKDCPKTIPNLVKLLMRVSESCTQLALSILWAVCKLAPEECASQAVEAGLAAKLLLVIQSGCNPVLKQRSAELLKLCSLNYTATLFISKCKLTRTIQ 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35585810 35587174 - CmPI595203_05g027120.1 Cmu05g2712 417626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2712 454 CDD RING-Ubox_PUB 72 122 IPR045210 -
Cmu05g2712 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 144 IPR013083 -
Cmu05g2712 454 PANTHER WDSAM1 PROTEIN 67 449 IPR045185 GO:0061630(InterPro)
Cmu05g2712 454 SUPERFAMILY RING/U-box 67 141 - -
Cmu05g2712 454 SUPERFAMILY ARM repeat 145 437 IPR016024 -
Cmu05g2712 454 Gene3D - 145 448 IPR011989 -
Cmu05g2712 454 MobiDBLite consensus disorder prediction 1 22 - -
Cmu05g2712 454 Pfam U-box domain 71 141 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu05g2712 454 SMART Ubox_2 74 137 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu05g2712 454 ProSiteProfiles U-box domain profile. 70 144 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2712 Cmu-Chr5:35585810 Cmu08g1602 Cmu-Chr8:27684708 7.40E-164 dispersed
Cmu05g2712 Cmu-Chr5:35585810 Cmu01g1508 Cmu-Chr1:28626593 7.70E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2712 - - - 0.0