Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2716 ATGAGCAGTTTCTCCTTGAAAAGCTTCTCGTGGAGGAAATCGAAATCCTCGAAATCCTCGAAATCGGATTCCTCCCATTCCTTTTCGTCGTCGTCGTCGTCGTCGGAACAGCGGTTTCTGACGGAAAATATGGGAACTCTGAGAGTGCCGGAGACCGTTCCTTCTCCCGCTGAGGATTGTGATAGGCTCAAGAAAGCTTTTGATGGATGGGGAACGGATGAGAAGACATTGATAAGGATATTAGGACAAAGAAATGCAGCTCAAAGGAAGGCAATCAGAGAGACTTATCTCGAGCTATACAACGAGTCATTAATTGATCGCATCAACGCTGAACTCTCTGGTGATTTTAGAAAAGCGGCGATTTTGTGGGCATATGATCCTGCAGAGAGGGATGCAAGATTGGCAAATGAAGCTTTGAGGTCATATAAGAAAGGCATCCATGAGCTTCAAGTATTAGTGGAGATAGCCTGTGCCACATCTCCTTACCATCTGATGGCAGTAAGGCAGGCCTACTGTTCTCTCTTTGATTGCTCGCTTGAAGAAGACATTTTCTCCACAATCTCCATGCCTCTTAGAAAGCTTCTTGTTGGTGTGGTGAGTTCCTTCAGGCATGATAAAGAGGTGGTGGACAGTATTGTTGCTGATTCAGAAGCCGATTTATTACACGATGCTATCAAATCGAAGCAATTATACCGCAGTGGCGTCATTTGGATACTCAGCACAAGGAATTTCTTTCAGCTTAGAGCAACCTTTGCATGCTATAAGCAAAAGTATGGAAACCCTATTGACCAGGACATTGTGAAATGTGGAACTAGTGATTTAGAATCTCTCTTCAAAATGGCGATTTGGTGCATTGACACTCCTGAAAAACACTTTGCTAGGGTAATCAACAAGGCCATTGTTGGGCTTGGGACAGATGAAGATTCTCTAACCAGAGCCATTGTATGTCGAGCTGAGATAGACACAATGAAAATTAGAGAAGAGTATTCCAACATGTTCAAAGGCAAGCTCGATGACGACGTTATCGGCGACACATCTGGAGACTACAAGGACATGTTGATGATCTTGCTTGGAGCTAAAGTTTGA 1086 43.92 MSSFSLKSFSWRKSKSSKSSKSDSSHSFSSSSSSSEQRFLTENMGTLRVPETVPSPAEDCDRLKKAFDGWGTDEKTLIRILGQRNAAQRKAIRETYLELYNESLIDRINAELSGDFRKAAILWAYDPAERDARLANEALRSYKKGIHELQVLVEIACATSPYHLMAVRQAYCSLFDCSLEEDIFSTISMPLRKLLVGVVSSFRHDKEVVDSIVADSEADLLHDAIKSKQLYRSGVIWILSTRNFFQLRATFACYKQKYGNPIDQDIVKCGTSDLESLFKMAIWCIDTPEKHFARVINKAIVGLGTDEDSLTRAIVCRAEIDTMKIREEYSNMFKGKLDDDVIGDTSGDYKDMLMILLGAKV 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35614188 35618528 - CmPI595203_05g027160.1 Cmu05g2716 417630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2716 361 FunFam Annexin 287 359 - -
Cmu05g2716 361 FunFam Annexin 44 125 - -
Cmu05g2716 361 PRINTS Plant annexin signature 165 179 IPR009118 -
Cmu05g2716 361 PRINTS Plant annexin signature 272 290 IPR009118 -
Cmu05g2716 361 PRINTS Plant annexin signature 207 227 IPR009118 -
Cmu05g2716 361 FunFam Annexin 212 286 - -
Cmu05g2716 361 PANTHER ANNEXIN 44 358 - GO:0005509(PANTHER)|GO:0005737(PANTHER)
Cmu05g2716 361 ProSiteProfiles Annexin repeat profile. 210 283 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cmu05g2716 361 Gene3D Annexin 38 125 IPR037104 GO:0005509(InterPro)|GO:0005544(InterPro)
Cmu05g2716 361 ProSiteProfiles Annexin repeat profile. 126 200 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cmu05g2716 361 FunFam Annexin 126 199 - -
Cmu05g2716 361 ProSitePatterns Annexin repeat signature. 304 356 IPR018252 GO:0005509(InterPro)|GO:0005544(InterPro)
Cmu05g2716 361 Gene3D Annexin 212 286 IPR037104 GO:0005509(InterPro)|GO:0005544(InterPro)
Cmu05g2716 361 Pfam Annexin 292 355 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cmu05g2716 361 Pfam Annexin 59 121 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cmu05g2716 361 Pfam Annexin 217 278 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cmu05g2716 361 Pfam Annexin 150 197 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cmu05g2716 361 MobiDBLite consensus disorder prediction 1 56 - -
Cmu05g2716 361 MobiDBLite consensus disorder prediction 1 42 - -
Cmu05g2716 361 Gene3D Annexin 126 199 IPR037104 GO:0005509(InterPro)|GO:0005544(InterPro)
Cmu05g2716 361 PRINTS Annexin family signature 108 124 IPR001464 GO:0005509(InterPro)|GO:0005544(InterPro)
Cmu05g2716 361 PRINTS Annexin family signature 300 320 IPR001464 GO:0005509(InterPro)|GO:0005544(InterPro)
Cmu05g2716 361 PRINTS Annexin family signature 344 357 IPR001464 GO:0005509(InterPro)|GO:0005544(InterPro)
Cmu05g2716 361 PRINTS Annexin family signature 68 90 IPR001464 GO:0005509(InterPro)|GO:0005544(InterPro)
Cmu05g2716 361 ProSiteProfiles Annexin repeat profile. 287 358 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cmu05g2716 361 ProSiteProfiles Annexin repeat profile. 54 125 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cmu05g2716 361 SUPERFAMILY Annexin 45 358 IPR037104 GO:0005509(InterPro)|GO:0005544(InterPro)
Cmu05g2716 361 Gene3D Annexin 288 359 IPR037104 GO:0005509(InterPro)|GO:0005544(InterPro)
Cmu05g2716 361 SMART annex3 150 198 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cmu05g2716 361 SMART annex3 71 123 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cmu05g2716 361 SMART annex3 235 281 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
Cmu05g2716 361 SMART annex3 304 356 IPR018502 GO:0005509(InterPro)|GO:0005544(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2716 K17098 - - csv:101221769 611.298
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2716 Cmu-Chr5:35614188 Cmu10g1681 Cmu-Chr10:19127989 1.30E-67 dispersed
Cmu05g2716 Cmu-Chr5:35614188 Cmu05g2718 Cmu-Chr5:35633156 4.10E-64 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g546 . . . . . . . Bma15g00014 . . . . . . . . . . . . . . . . Cla05g02669 Cam05g2866 Cec05g2903 Cco05g2935 Clacu05g2870 Cmu05g2716 Cre05g2833 Cone13ag0722 Cone19ag0721 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004951 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 2 0 33