Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2722 ATGCTGTTTATTGTCGTATCACTACCTAAGTTGCCGTCTACCCAGATTTCTTTGGTGGGGTTCTCATTATCTTTTGAGGTATTTCACGTTTTCTTTGATTTCTTCTTTTCCTGGGATTTGGGCTGTTCTGATTTGGGGTTCTTGTTAATGGGTCTTTTTTGTCTTTTTGGGATGCTTTTGTTTTCGGATGTTCTATTCTGCATTCCGTTTCTGGGTTGTCTCAATGTGACTTTGAATGTTTCTGGTTCTTTGATTGGTTTACTTTGTGTTGCTGCTGTTCTATTATCTATAGGCTTCAATTTTCTTTTAGTTAAGTTTTTGTATGGAGTTCTTGGTTTAGGAAGCACTCTATTGATAAAAATGTCATCTGCCAATCCTTATTTTGATGACATTCGGACCAAACCTGAGGTTATTGATCCTCCCCAAGATGATGACATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGAAATGGAGGAAAACCTAACATAGCTGTCTCTAGCAGTGTTCGTGAGCTGTTGGAGTGCCCTGTTTGCTTAAATGCTATGTACCCTCCCATTCATCAGTGTTCGAATGGTCACACGTTGTGTTCAGGTTGCAAGCCTAGGGTGCACAACCGATGTCCAACCTGCAGGCATGAACTTGGCAATATCAGATGTCTTGCATTAGAGAAGGTGGCTGCATCTCTGGAACTTCCATGTAAATATCAAACTTTTGGATGTGTAGGCATATACCCATACTACAGCAAGCTGAAACACGAATCTCAATGTGTGTATCGGCCCTATAACTGTCCATATGCGGGATCGGAATGCACAGTTATTGGCGATATCCCATTTTTGGTAGCCCACCTCAAGGATGATCACAAGGTTGACATGCATAATGGAAGCACTTTCAATCACCGGTATGTCAAGTCAAATCCGCAAGAGGTTGAAAATGCCACCTGGATGTTAACGGTTTTCAGCTGTTTTGGTCAATACTTTTGTTTACATTTCGAAGCTTTCCAGCTCGGAATGGCACCTGTCTACATAGCTTTTTTGCGGTTTATGGGCGATGATAATGAAGCAAAGAACTATAGTTATAGTCTTGAGGTTGGTGGAAATGGGAGGAAGATGGTGTGGCAAGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTCCGAGACAGTTTTGACGGTCTTATTATCCAACGTAATATGGCGCTCTTCTTCTCGGGGGGAGATCGGAAAGAATTGAAACTCAGGGTAACTGAGAACAAGCTCGGACATGAATTGTATTTATCTTGGGATCAATCTGTCAGAATTTTCCTAGGCCTATTTGAGATGTCACTCAAGTTACACCATATTGATTTAAAGGGTGGTTCAGGTACCCAGAAAAGGCTAAAGGATCTCTCGGCTCAGTCTGCCAATAAGTACTGTGCCGATTGTGGTTCTCCAGATCCAAAATGGGTATCTGTGAGTTTTGGGGCATTTATTTGCATCAAGTGCTCTGGAGTACACCGAAGCCTTGGAGTGCATATATCTAAGGTTCTTTCGGTGAAGTTAGATGATTGGACAGATGAACAAGTTGATGCTTTGATGAGTGTAGGTGGAAATACTGCCGTAAACAAAAAGTATGAAGTTTGCATCCCAGATGGCAATAAAAAGCCAAAACCAGACTCCTCCATAGAGGAGCGTTTGGATTTTATAAGGAAAAAATATGAGCTGCTGCAATTTGCAAGTCTAGACGATCAGTTTTTCTGTCCTTTTCCACCCCCGCAGAAGAGAAATTCATCACTCTCGCACAGCGCTTCCAGTACTGATGTAAACCTAGAAAGGAGGAATTATGAAAAACTACCAACAAAAACTCGAATTGGAAGTGCATTCCGGAACAGCTGGGGAAGAAAAGATTCCGAACATAGGAACTGCAAGAAGGGAAATGCAAATGCATTGGTATTAAGCAGCTCAATGGCGGGTATGATTGAATTCGTTGGTTTAATCAAGGTCAACGTGGTTAGAGGAACCAATTTAGCTGTCAGGGATGTCGTGACGAGTGATCCATATGTAATTCTCTCGTTGGGCCACCAATCAGTGAAGACACGAGTTATAAAGAGTAGTTTGAATCCAGTCTGGAATGAGAGCCTAATGTTGTCTATTCCAGATTACATTCCTCCATTAAAAGTGCTTGTGTATGACAAAGATACATTTTCAACCGATGACTTCATGGGTGAAGCAGAAATCGATATCAATCCACTGCTCACCGCAGCCCGAGCCTGCGAGAGGTCCACAATCAGTGAACCAATGCAGTTAGGAAAATGGGTTGCAAGCAAGGAGAACACTCTTGCAAAGGATGGCATCATCAGTCTTGTAGATGGGAAGATCCGACAAGACATCTCTTTGAAGCTGCAGAACGTCGAGCGGGGCGTGCTGGAGATGGAGCTTGAATGTGTTCCTCTTTCTCAGTAG 2448 42.85 MLFIVVSLPKLPSTQISLVGFSLSFEVFHVFFDFFFSWDLGCSDLGFLLMGLFCLFGMLLFSDVLFCIPFLGCLNVTLNVSGSLIGLLCVAAVLLSIGFNFLLVKFLYGVLGLGSTLLIKMSSANPYFDDIRTKPEVIDPPQDDDMMDVSESVSDPARNGGKPNIAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQTFGCVGIYPYYSKLKHESQCVYRPYNCPYAGSECTVIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTENKLGHELYLSWDQSVRIFLGLFEMSLKLHHIDLKGGSGTQKRLKDLSAQSANKYCADCGSPDPKWVSVSFGAFICIKCSGVHRSLGVHISKVLSVKLDDWTDEQVDALMSVGGNTAVNKKYEVCIPDGNKKPKPDSSIEERLDFIRKKYELLQFASLDDQFFCPFPPPQKRNSSLSHSASSTDVNLERRNYEKLPTKTRIGSAFRNSWGRKDSEHRNCKKGNANALVLSSSMAGMIEFVGLIKVNVVRGTNLAVRDVVTSDPYVILSLGHQSVKTRVIKSSLNPVWNESLMLSIPDYIPPLKVLVYDKDTFSTDDFMGEAEIDINPLLTAARACERSTISEPMQLGKWVASKENTLAKDGIISLVDGKIRQDISLKLQNVERGVLEMELECVPLSQ 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35680536 35692497 + CmPI595203_05g027220.1 Cmu05g2722 417636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2722 815 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 286 418 IPR008974 GO:0005515(InterPro)
Cmu05g2722 815 FunFam E3 ubiquitin-protein ligase SINAT5-like 286 418 - -
Cmu05g2722 815 SUPERFAMILY RING/U-box 171 217 - -
Cmu05g2722 815 ProSiteProfiles Zinc finger RING-type profile. 177 213 IPR001841 -
Cmu05g2722 815 ProSiteProfiles C2 domain profile. 641 757 IPR000008 -
Cmu05g2722 815 Gene3D C2 domain 658 812 IPR035892 -
Cmu05g2722 815 CDD Sina 291 418 - -
Cmu05g2722 815 Pfam Sina, zinc finger 226 301 - -
Cmu05g2722 815 CDD C2_ArfGAP 658 802 - -
Cmu05g2722 815 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 228 IPR013083 -
Cmu05g2722 815 ProSiteProfiles ARF GTPase-activating proteins domain profile. 459 573 IPR001164 GO:0005096(InterPro)
Cmu05g2722 815 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 657 815 - -
Cmu05g2722 815 Gene3D Arf GTPase activating protein 448 580 IPR038508 -
Cmu05g2722 815 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 229 285 IPR013083 -
Cmu05g2722 815 CDD RING-HC_SIAHs 175 213 - -
Cmu05g2722 815 FunFam E3 ubiquitin-protein ligase SINAT5-like 135 228 - -
Cmu05g2722 815 SMART arf_gap_3 459 580 IPR001164 GO:0005096(InterPro)
Cmu05g2722 815 CDD ArfGap 462 568 - -
Cmu05g2722 815 SMART C2_3c 660 755 IPR000008 -
Cmu05g2722 815 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 177 212 IPR049548 -
Cmu05g2722 815 Pfam C2 domain 660 748 IPR000008 -
Cmu05g2722 815 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 455 815 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Cmu05g2722 815 Pfam Sina, TRAF-like domain 321 418 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cmu05g2722 815 PRINTS HIV Rev interacting protein signature 490 507 IPR001164 GO:0005096(InterPro)
Cmu05g2722 815 PRINTS HIV Rev interacting protein signature 471 490 IPR001164 GO:0005096(InterPro)
Cmu05g2722 815 PRINTS HIV Rev interacting protein signature 511 532 IPR001164 GO:0005096(InterPro)
Cmu05g2722 815 ProSiteProfiles Zinc finger SIAH-type profile. 230 290 IPR013010 GO:0008270(InterPro)
Cmu05g2722 815 FunFam stromal membrane-associated protein 1 isoform X1 448 579 - -
Cmu05g2722 815 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 658 752 IPR035892 -
Cmu05g2722 815 FunFam E3 ubiquitin-protein ligase SINAT3 229 285 - -
Cmu05g2722 815 SUPERFAMILY ArfGap/RecO-like zinc finger 459 574 IPR037278 -
Cmu05g2722 815 SUPERFAMILY TRAF domain-like 230 418 - -
Cmu05g2722 815 Pfam Putative GTPase activating protein for Arf 460 574 IPR001164 GO:0005096(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0741 Cmu-Chr1:8363189 Cmu05g2722 Cmu-Chr5:35680536 5.70E-168 dispersed
Cmu01g0743 Cmu-Chr1:8379126 Cmu05g2722 Cmu-Chr5:35680536 1.20E-140 dispersed
Cmu03g1226 Cmu-Chr3:6860850 Cmu05g2722 Cmu-Chr5:35680536 9.80E-89 dispersed
Cmu05g2722 Cmu-Chr5:35680536 Cmu06g0127 Cmu-Chr6:1218718 1.10E-125 dispersed
Cmu05g2722 Cmu-Chr5:35680536 Cmu01g2459 Cmu-Chr1:36550089 2.80E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2722 K04506 - csv:101221541 708.753