Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2725 ATGGCCCTTCTCTCTGCTGAGCCTCGATTTCATGTCTTGGCTGTTGATGACAGCCTTGTTGATAGGAAGCTCATTGAAAGGCTCCTCAAAACTTCCTCCTTCAATGTTACTGCTGTGGATTCTGGAAGCAAAGCTTTGGAGCTTCTGGGTTTGGTTAGAGAAAGAAATGGAAGCACGCATTCTCCTATTTCCCCTGAAAATCATCATCATCATCATCATCATCAACAAGAGATTGAAGTTAATCTCATCATTACAGATTACTGTATGCCAGAAATGACAGGCTATGATCTTCTCAGAAAGATCAAGGAATCTGACTCACTTAAAGACATTCCTGTTGTGATTATGTCCTCTGAGAATGTTCCATCAAGAATCAACAGATGTTTGGAAGAAGGAGCTGAGGAGTTTTTGCTAAAACCAGTGAAATTATCTGATGTCAATAAGCTTAAGCCTTTCATATGTAGAGGTAAAGCCAAGGAAATGGATTTCAACAATCTCAAGAGAAAGGAAATGGAAAAGAGCCAATCATCTGAGAGAACAAGAACAAAATACAATGAACTTTTCTGA 564 39.18 MALLSAEPRFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSTHSPISPENHHHHHHHQQEIEVNLIITDYCMPEMTGYDLLRKIKESDSLKDIPVVIMSSENVPSRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGKAKEMDFNNLKRKEMEKSQSSERTRTKYNELF 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35717799 35719274 - CmPI595203_05g027250.1 Cmu05g2725 417639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2725 187 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 177 IPR045279 GO:0009736(InterPro)
Cmu05g2725 187 MobiDBLite consensus disorder prediction 168 187 - -
Cmu05g2725 187 Gene3D - 11 184 - -
Cmu05g2725 187 SUPERFAMILY CheY-like 9 145 IPR011006 -
Cmu05g2725 187 CDD REC_typeA_ARR 12 148 - -
Cmu05g2725 187 Pfam Response regulator receiver domain 75 145 IPR001789 GO:0000160(InterPro)
Cmu05g2725 187 SMART REC_2 10 149 IPR001789 GO:0000160(InterPro)
Cmu05g2725 187 ProSiteProfiles Response regulatory domain profile. 11 153 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0720 Cmu-Chr1:8075246 Cmu05g2725 Cmu-Chr5:35717799 1.70E-51 dispersed
Cmu05g2549 Cmu-Chr5:34264382 Cmu05g2725 Cmu-Chr5:35717799 4.20E-38 dispersed
Cmu05g2725 Cmu-Chr5:35717799 Cmu10g2355 Cmu-Chr10:29898023 1.00E-50 dispersed
Cmu05g2725 Cmu-Chr5:35717799 Cmu06g1714 Cmu-Chr6:28166954 6.60E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6303 PF00072 Response_reg 5.70E-20 CL0304 Cmu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2725 K14492 - csv:101207245 289.656