Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2735 ATGTGGAAAAGTTTTCAGATATGCCTCTCAATTGCATCTCATGTCAAGCTAGACTCAATAGAGGCATGCTGTACTGAACCGGGTTGCTTGAAAACATTTACCAACAAGCAATGCCTAAGGGCTCATATGCAGTCCTGCCACCAATACATCAAATGTGAGATTTGTGGGGAAAAGAAATTAAGAAAGAACTTGAAGCAACATCTACGACAAAAGCATGAAAGTGAAGGTCCACTGGAGGCAATTCCATGTAGGTATGAGGGCTGCAGCAAGGTTTTTTCAACAGCTTCAAATCTCCAGCAACACATGAAGGTCGTGCATATGGGACAAAAGCTGTTTGCATGTTGTTTCCCTGGTTGTGGCATGAGATTTGGGTATAAGCATGTGAGAGACAACCATGAGAAAAGTGGCCAGCATGTTTACACTAATGGGGATTTTGAAGCAGCTGATGAACAATTCCGCTCAAAACCAAGGGGAGGGAGAAAAAGAATCTGTCCAACTGTTGAAATGCTCATAAGGAAGAGGGTTACCCCCCGAATAAAATATTTAAGTTCTTGGTTGTTCCTGTCGAAGTTTTACATTTTTGTTGGTTTCTCTGATCCTGTGTTGCTTGGCTTGGCATCGTTGATTCATACAATCAATTAG 642 41.9 MWKSFQICLSIASHVKLDSIEACCTEPGCLKTFTNKQCLRAHMQSCHQYIKCEICGEKKLRKNLKQHLRQKHESEGPLEAIPCRYEGCSKVFSTASNLQQHMKVVHMGQKLFACCFPGCGMRFGYKHVRDNHEKSGQHVYTNGDFEAADEQFRSKPRGGRKRICPTVEMLIRKRVTPRIKYLSSWLFLSKFYIFVGFSDPVLLGLASLIHTIN 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35855527 35856699 - CmPI595203_05g027350.1 Cmu05g2735 417649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2735 213 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 111 IPR013087 -
Cmu05g2735 213 ProSitePatterns Zinc finger C2H2 type domain signature. 24 47 IPR013087 -
Cmu05g2735 213 ProSitePatterns Zinc finger C2H2 type domain signature. 114 138 IPR013087 -
Cmu05g2735 213 SMART c2h2final6 50 72 IPR013087 -
Cmu05g2735 213 SMART c2h2final6 81 106 IPR013087 -
Cmu05g2735 213 SMART c2h2final6 22 47 IPR013087 -
Cmu05g2735 213 SMART c2h2final6 112 138 IPR013087 -
Cmu05g2735 213 Gene3D Classic Zinc Finger 81 110 - -
Cmu05g2735 213 ProSitePatterns Zinc finger C2H2 type domain signature. 83 106 IPR013087 -
Cmu05g2735 213 PANTHER ZINC FINGER PROTEIN 13 177 IPR051061 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0005730(PANTHER)|GO:0006357(PANTHER)|GO:0080084(PANTHER)
Cmu05g2735 213 Pfam Zinc finger, C2H2 type 83 106 IPR013087 -
Cmu05g2735 213 SUPERFAMILY beta-beta-alpha zinc fingers 62 118 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2735 Cmu-Chr5:35855527 Cmu10g2898 Cmu-Chr10:35352864 2.30E-75 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6306 PF00096 zf-C2H2 2.40E-05 CL0361 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2735 K09191 - csv:101217595 345.51