Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2744 ATGATGGCTTGTGCTTCACAGGCGCTGATTGCTGCAAATTCATGCTCGTTTCCGAGCCATAGAATCATTAGAAAGTCACAGAGACTCTTCAATCAAAGTGCTTCCAATCTTGTTTTCACGGTCAGAGCTTCATCTGAAGATTCCGAATGCAATGTCGACGAATGTGCTCCAGATAAAGAGGTGGGGAAAATAAGTATGGAATGGCTAGCTGGGGAGAAAACTAAAGTGGTTGGGACATACCCACCGACGAAAAAAGGGTGGACTGGCTACGTAGAGAAGGACACTGCAGGACAAACAAATATATATTCCGTCGAACCAGTAGTTTATGTAGCAGAAAGTGCTATAAGCTCGGGGACTGCAGGTTCTTCTTCTGAAGGAGCTGAGAACACACTGGCAATTGCTGGTGGAATGGCACTCATTGCGGTTGCTGCAGCTTCATCTATACTGCTTCAAGTTGGTAAGAAACCACCTGAAGTGAAAACCGTTGAATACACTGGACCCTCACTCAGTTACTATATCAACAAGTTCAATACACGAGAAATTGTCCAACAACCGGTACAAAGTGAACCCGAATCGTCCTCTCAAGTCGACAGCGTCGCTCCTGAAGTAACGGAGATTCAAATTCAATCAGACATTGCTGCTCCTGAAGTAACGGATATTCAAGTTGAGTCCCAAACGACAGAGCCATCCTCTTCGGCTGTAGCCAGTGTCTCTTGGGGTAGTAATGGAAAGATGAGGGTTGAATCAGTTAAATGTGCGTTTTTTGCTCCCTCTGCTGTCGAGTGCTGTGGTGATTTTCGTACTATGAATTCCTTGGTTACTCCTAGCACTGTACTCATGGAAAGCGTGGAGGAAACGAAGCCATCAGCTACAAATAGTTGCCATACTGATGGCGGAACAAACACTGCAGACGTTCAATTTTCAGGATTGTGTCAGAATGGACTACATCTGGATGAGAATTGTTGTAATCAAGCATTAAAGTTATTTAGAGAGACGAAGCACCTTTTGGTTGCAAATATATCAGCAATCGGGAGTGGAATTCCTGAAGAAGCCGAACGTTTTTGGTCTGCCTTTGTTTTATATACTATGAAGAGGCTGAGAGATAAGAATTCAGAGAGTTCGCATCAGGGATCTGAGAACAACAGCTTCACTTTATGCCACATACTGAGAGTTTGCAAGCTGAACATAGTGGAATTTTTTAAAGAGCTGCCGCAGTTTGTTGTTAAAGCTGGTCCAGTATTAAGTAATCTCTATGGTGCTGACTGGGAGAATAGACTAGTGGCAAAGGAGTTGCAGGCTAACTTCGTGCATTTGAGCCTCTTAAGCAAGTATTATAAGCGTGTCTACCGAGAGTTCTTCTCCACCAATGATGCTAATGTTGAAAAGCAGTCAGCTATATCCTGCCCCACCGGTTACTTATCTGATTACCATCGCTTTGGATGGTTATTGTTTTTGGCACTTCGTGTACATGCTTTCAGTCGTTTTAAGGACTTGGTGACTTGCACTAATGGTTTGGTTTCCATTTTGGCTATTTTAATTCTTCATATTCCAGTTCGTTTCAGAAACTTCAGCATTCTTGACTGTGAACGCTTTGTTAAGAAAGGTGGAAAAAGAGTGGATCTGCTTGGATCACTTTGTAATGTCTATGACACCTCAGAGGAAGAACTGAAGGAAGTTATGGAGAAGGCAAATAGTTTGATAGAGGATATTTTGAAGAAGAAGCCTCGTATGGCTTCTGAGTGTAACAGTAAAAGCTTGGAGAATATTGACACTGAGGGTTTGATATACTTTGAAGGCTTAATGGAGGAGTCATCTCTTTCATCCAGTTTAGAAATTCTTGAAAAGGACTATGAAGATGCAATTTGTAATAAAGGTGAGCTTGATGAGCGGATTTTTGTTAGTGACGAGGACAGTTTACTTGGGTCGGGTAGCTTGTCAGCAGGTGCTGTTACAATGGGTGGCATCAAGAGGAAGTTTGACTCAGTGTGCTCACCTGCAAGGACAATAACCAGTCCAATGTCTCCACTTCGCTCTCCTGCTTCGCATGCCAATGGCACTCTTAATAGTGGTAATGCAAAACTTGCTGCCACACCTGTTAGCACAGCCATGACAACAGCAAAGTGGCTCAGAACTGTTATTTCCCCACTTCCAGCAAAACCTTCAGCAGAGATGGAGCGCTTTTTGGCTTCATGTGATAGGGATGTAACTAATGATGTAGTCCGTAGGGCGCATATTATACTTGAGGCCATATTTCCAAATAGTGCTCTAGGAGAGCGCTGTATAGCTGGAAATTTACAAAGTGCAAACCTCATGGATAACATCTGGGCAGAACAGCGACGACTAGAAGCACTGAAGTTATATTATAGAGTTCTGGAAGCAATGTGCAGAGCAGAGTCTCAGATGCTGCATGTGACTAATTTGACCTCTTTGCTTACTAATGAGAGGTTCCACAGATGTATGCTGGCTTGTTCTGCCGAATTGGTTTTGGCAACTCATAAAACTGTTACAATGTTGTTTCCTGCAGTAATGGAAAGAACTGGCATAACAGCTTTTGACCTTAGTAAGGTGATAGAAAGTTTCATTAGACATGAAGAATCACTTCCTAGAGAATTGAGGCGACATCTTAATTCTTTGGAAGAACGACTTTTAGAGAGTATGGTATGGGAAAAAGGTTCATCAATGTATAACTCCCTGATTGTTGCTAAACCTGCCCTTGCTGCAGAAATTAATCGTCTGGGTTTATTAGCTGAACCCATGCCATCTTTGGATGCCATTGCAATTCAAATTAACTTTTCTGGTATGGGGGTATCAACCATGCCTAATCTGCAAAAGCATGAGAGTTTGCCAGGTCAGAATGGGGATATAAGATCGCCCAAAAGATTGTGCACAGATTTAAGAAGTGTGCTAGTGGAACGGAATTCCTTTACTTCTCCGGTGAAGGACCGACTCATGGCTTTCAGTAGTATTAAGTCTAAGCTTCTGCCACCTCCTTTACAGTCAGCATTTGCAAGTCCTACTCGGCCTAATCCTGGGGGTGGTGGAGAAACGTGTGCTGAAACTGGAATTAACATTTTCTTTAGCAAGATCATCAAGTTGGCTGCTGTAAGAGTCAACGGTATGGTGGAAAGGTTGCAGTTATCTCATCTGATCAGGGAGAATGTCTACTGCCTTTTCCAGCAGATACTCAGTCAAAAGACATCACTATTATTTAACCGTCACATCGACCAGATCATCCTTTGTTGTTTCTATGGTGTTGCAAAGATATCTCAATTGAGCCTCACGTTTAGGGAAATCATATACAACTACAGGAAGCAACCGCAATGTAAACCACAAGTCTTCCGCAATGTGTTTGTTGACTGGTCTTCAGCACGTCGTAATGGGAGATCAGGACAGGATCATGTGGATATAATTACCTTCTACAATGAAATATTTATTCCTTCTGTGAAACCTTTGCTTGTTGAGATTGGCCCGGCTGGATCAACCATGAAAACTGACAGGGTTCCTCAAGTCAACAACAACAGCGATGCACCATGTCCTGGATCACCTAAGATATCTCCTTTTCCAAGTCTTCCCGATATGTCTCCAAAGAAAGTATCTTCAGCACATAATGTCTATGTCTCTCCATTAAGATCATCAAAGATGGATGCGTTGATTTCACATAGTTCGAAAAGCTACTACGCTTGCGTTGGAGAGAGCACCCATGCGTTTCAAAGCCCTTCAAAAGACCTTACTGCCATAAACAACCGTTTGAATGGTACGCGGAAACTCCGAGGCACACTAAATTTTGACGACGCGGACGTTGGTTTAGTAAGTGATTCCCTGGTGGCTAATAGCCTTTACCTACAAAATGGAAGTTGTGGATCATCTTCAGGTGCACCTATTAAATCTGAACAACCTGATTCTTAA 3906 42.75 MMACASQALIAANSCSFPSHRIIRKSQRLFNQSASNLVFTVRASSEDSECNVDECAPDKEVGKISMEWLAGEKTKVVGTYPPTKKGWTGYVEKDTAGQTNIYSVEPVVYVAESAISSGTAGSSSEGAENTLAIAGGMALIAVAAASSILLQVGKKPPEVKTVEYTGPSLSYYINKFNTREIVQQPVQSEPESSSQVDSVAPEVTEIQIQSDIAAPEVTDIQVESQTTEPSSSAVASVSWGSNGKMRVESVKCAFFAPSAVECCGDFRTMNSLVTPSTVLMESVEETKPSATNSCHTDGGTNTADVQFSGLCQNGLHLDENCCNQALKLFRETKHLLVANISAIGSGIPEEAERFWSAFVLYTMKRLRDKNSESSHQGSENNSFTLCHILRVCKLNIVEFFKELPQFVVKAGPVLSNLYGADWENRLVAKELQANFVHLSLLSKYYKRVYREFFSTNDANVEKQSAISCPTGYLSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILILHIPVRFRNFSILDCERFVKKGGKRVDLLGSLCNVYDTSEEELKEVMEKANSLIEDILKKKPRMASECNSKSLENIDTEGLIYFEGLMEESSLSSSLEILEKDYEDAICNKGELDERIFVSDEDSLLGSGSLSAGAVTMGGIKRKFDSVCSPARTITSPMSPLRSPASHANGTLNSGNAKLAATPVSTAMTTAKWLRTVISPLPAKPSAEMERFLASCDRDVTNDVVRRAHIILEAIFPNSALGERCIAGNLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAESQMLHVTNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVMERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVAKPALAAEINRLGLLAEPMPSLDAIAIQINFSGMGVSTMPNLQKHESLPGQNGDIRSPKRLCTDLRSVLVERNSFTSPVKDRLMAFSSIKSKLLPPPLQSAFASPTRPNPGGGGETCAETGINIFFSKIIKLAAVRVNGMVERLQLSHLIRENVYCLFQQILSQKTSLLFNRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPQCKPQVFRNVFVDWSSARRNGRSGQDHVDIITFYNEIFIPSVKPLLVEIGPAGSTMKTDRVPQVNNNSDAPCPGSPKISPFPSLPDMSPKKVSSAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAFQSPSKDLTAINNRLNGTRKLRGTLNFDDADVGLVSDSLVANSLYLQNGSCGSSSGAPIKSEQPDS 1301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35993727 36005643 - CmPI595203_05g027440.1 Cmu05g2744 417658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2744 1301 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 285 1298 IPR028309 GO:0000785(PANTHER)|GO:0000977(PANTHER)|GO:0005667(PANTHER)|GO:0006357(InterPro)|GO:0030154(PANTHER)|GO:0051726(InterPro)|GO:2000134(PANTHER)
Cmu05g2744 1301 MobiDBLite consensus disorder prediction 1163 1195 - -
Cmu05g2744 1301 SMART RB_A_2 697 898 IPR002720 GO:0005634(InterPro)|GO:0051726(InterPro)
Cmu05g2744 1301 Gene3D - 983 1176 - -
Cmu05g2744 1301 Pfam Retinoblastoma-associated protein B domain 1022 1149 IPR002719 GO:0005634(InterPro)|GO:0051726(InterPro)
Cmu05g2744 1301 SUPERFAMILY Cyclin-like 1020 1189 IPR036915 -
Cmu05g2744 1301 MobiDBLite consensus disorder prediction 670 689 - -
Cmu05g2744 1301 SUPERFAMILY Cyclin-like 705 900 IPR036915 -
Cmu05g2744 1301 FunFam Retinoblastoma-related protein 1 972 1182 - -
Cmu05g2744 1301 CDD CYCLIN_AtRBR_like 1022 1153 - -
Cmu05g2744 1301 Pfam Domain of unknown function (DUF3452) 377 515 IPR024599 -
Cmu05g2744 1301 Coils Coil 549 573 - -
Cmu05g2744 1301 FunFam Retinoblastoma-related protein 1 700 888 - -
Cmu05g2744 1301 Pfam Retinoblastoma-associated protein A domain 697 898 IPR002720 GO:0005634(InterPro)|GO:0051726(InterPro)
Cmu05g2744 1301 MobiDBLite consensus disorder prediction 1164 1179 - -
Cmu05g2744 1301 Coils Coil 610 630 - -
Cmu05g2744 1301 FunFam Retinoblastoma-related protein 1 476 634 - -
Cmu05g2744 1301 Gene3D - 700 888 - -
Cmu05g2744 1301 Gene3D - 476 634 - -
Cmu05g2744 1301 SMART DUF3452_2 366 515 IPR024599 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6309 PF01858 RB_A 1.90E-63 CL0065 Cmu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2744 K04681 - csv:101219810 1909.81