Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0005 ATGAGTTTTGGGGGTTTCCTCGACGGCGGCGGCGGCGGAGGAGGCGGTGGTGCTCGAATCTTAGCCGATTTACCTTACACAAATAACTCCACCACCAACGCCAACAATAATCCCACCGGCGGCATCGGCGTCGGCGGAAATATGTCCTCCGGCGCAATCGCTCCGCCGCGCCTCATCACTCAATCTCTCACCAAATCGATGTTCAACTCCCCCGGACTCTCTCTCGCTCTTACGAACATGGACGGCGGGCAGGGGGATTTAGCTGCCCGACTGCCCGAGGGTTTCGAGCATAATGTTGGAAGAAGAGGCAGAGAAGAAGAACACGAGAGTAGATCTGGGAGTGACAACATGGACGGTGGCTCCGGTGATGACCAGGACGCCGCCGACAACCCTCCGAGGAAGAAACGTTACCACCGACACACTCCTCAGCAAATCCAAGAGCTCGAAGCTGTCTTTAAAGAGTGCCCTCATCCTGATGAGAAGCAACGGCTCGAGTTGAGTCGGAGGCTGTGTTTAGAAACTAGGCAAGTTAAATTTTGGTTCCAAAATCGGAGGACCCAAATGAAGACCCAATTGGAACGCCATGAGAATACTTTACTTAGACAGGAGAATGATAAGCTTAGAGCTGAGAATATGTCGATTCGAGATGCTATGAGGAACCCAATCTGTTCGAACTGTGGTGGTCCAGCAATCATCGGCGAAATCTCGCTGGAAGAACAGCAGTTGAGGATTGAAAATGCTCGGCTGAAGGATGAATTGGACCGGGTTTGTGCACTCGCTGGGAAGTTTCTTGGCAGGCCGATTTCGTCGCTGGCTAACTCAATTGCACCTCCATTGCCGAGCTCGAGTCTGGAACTGGGAGTTGGGAGTAATGGATTTGGGAGTTTGACCATGGCGACGTCAATGCCTATTGGGCCTGATTTCGGAGGTGGGTTGTCAGGCAATCTGGCTGTCGTTCAGCCACCTGCGAGGCCAACACCGGGGATGGGACTTGATCGTTCAGTTGAGCGATCTATGCTACTGGAGCTTGCTTTGGCTGCCATGGATGAATTGGTCAAAATGGCGCAGACGGACGAGCCACTTTGGATTGGGAGCTTGGAAGGTGGGAGGGAAATACTGAACCAGGAGGAGTACATGAGGACATTCACTCCTTGCATAGGTATGAAACCAAACGGTTTTGTCACCGAGGCGTCGAGAGAAACTGGCATGGTGATCATCAATAGCTTGGCTCTTGTGGAGACATTGATGGACTCGAATCGATGGGCAGAGATGTTTCCGTGTATGATTGCTCGAACCACGACCACTGATGTGATCTCCAGTGGCATGGGGGGAACGAGGAATGGTGCACTTCAACTGATGCACGCAGAGCTTCAAGTGCTCTCACCGTTGGTGCCAGTCCGGGAAGTCAATTTTCTGCGGTTTTGCAAGCAGCACGCCGAAGGTGTATGGGCAGTCGTCGATGTATCGGTCGATACCATGAGAGAGACTCCGACCAGTGGTGGTCCTTCATTTGGCAACTGCAGAAGGCTTCCTTCTGGGTGTGTTGTTCAAGACATGCCCAACGGGTATTCCAAGGTTACGTGGGTGGAACATGCGGAGTACGATGATAGCCAAGTGCACCAGCTCTACCGTCCCCTACTCAGCTCTGGTATGGGCTTTGGAGCGCAACGGTGGGTTGCCACCCTTCAACGACAATGTGAATGCCTCGCCATCCTCATGTCATCCGCTGTACCAATCCGAGACCACACCGCCATAACCGCAGGTGGGCGGCGGAGCATGCTGAAGCTAGCGCAGCGAATGACAGCGAACTTCTGCGCAGGTGTGTGTGCATCCACAGTGCACAAATGGAACAAGCTGAATGCTGGGAGCGTAGATGAGGACGTCCGTGTCATGACGCGGAAGAGTGTGGACGATCCTGGGGAGCCTCCGGGTATTGTGTTGAGCGCCGCTACGTCAGTGTGGCTCCCGGTATCTCCCCAACGGCTCTTTGATTTCCTTCGTGACGAGCGGCTGAGGAGTGAATGGGACATCCTATCCAACGGCGGCCCCATGCAGGAGATGGCCCATATTGCCAAAGGCCAAGATCATGGCAACTGCGTCTCTCTTTTAAGAGCCAGCGCTATGAATGCGAACCAGAGCAGTATGTTGATTCTACAAGAGACATGCATAGACGCGGCGGGATCGCTTGTGGTGTACGCGCCGGTGGACATTCCGGCAATGCACGTCGTGATGAACGGTGGCGATTCGGCTTACGTGGCACTTTTACCGTCAGGGTTTGCGATCGTGCCTGACGGGGCGGTGACAGTGACCAATGGGAGCAGTCCAAGTGGCGGGGAGGGTCCACAGAGTCAGAGAGCGACAGGCGGTGGGTCCCTCCTCACCGTCGCATTTCAGATCCTCGTGAATAGCCTCCCTACAGCCAAGCTCACCGTAGAATCGGTTGAAACGGTCAATAATCTCATATCTTGCACCGTCCAGAAAATCAAGGCCGCTCTTCAATGCGAAACCTGA 2511 54.08 MSFGGFLDGGGGGGGGGARILADLPYTNNSTTNANNNPTGGIGVGGNMSSGAIAPPRLITQSLTKSMFNSPGLSLALTNMDGGQGDLAARLPEGFEHNVGRRGREEEHESRSGSDNMDGGSGDDQDAADNPPRKKRYHRHTPQQIQELEAVFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPICSNCGGPAIIGEISLEEQQLRIENARLKDELDRVCALAGKFLGRPISSLANSIAPPLPSSSLELGVGSNGFGSLTMATSMPIGPDFGGGLSGNLAVVQPPARPTPGMGLDRSVERSMLLELALAAMDELVKMAQTDEPLWIGSLEGGREILNQEEYMRTFTPCIGMKPNGFVTEASRETGMVIINSLALVETLMDSNRWAEMFPCMIARTTTTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSVDTMRETPTSGGPSFGNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDDSQVHQLYRPLLSSGMGFGAQRWVATLQRQCECLAILMSSAVPIRDHTAITAGGRRSMLKLAQRMTANFCAGVCASTVHKWNKLNAGSVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGAVTVTNGSSPSGGEGPQSQRATGGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCET 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 97544 102372 - CmPI595203_06g000050.1 Cmu06g0005 417665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0005 836 CDD START_ArGLABRA2_like 337 567 - -
Cmu06g0005 836 Gene3D - 121 207 - -
Cmu06g0005 836 SMART START_1 342 568 IPR002913 GO:0008289(InterPro)
Cmu06g0005 836 MobiDBLite consensus disorder prediction 95 114 - -
Cmu06g0005 836 Coils Coil 185 217 - -
Cmu06g0005 836 Pfam Homeodomain 134 189 IPR001356 GO:0003677(InterPro)
Cmu06g0005 836 ProSiteProfiles 'Homeobox' domain profile. 131 191 IPR001356 GO:0003677(InterPro)
Cmu06g0005 836 SUPERFAMILY Bet v1-like 596 829 - -
Cmu06g0005 836 Pfam START domain 342 568 IPR002913 GO:0008289(InterPro)
Cmu06g0005 836 FunFam Homeobox-leucine zipper protein GLABRA 2 342 567 - -
Cmu06g0005 836 ProSitePatterns 'Homeobox' domain signature. 166 189 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cmu06g0005 836 CDD homeodomain 133 191 IPR001356 GO:0003677(InterPro)
Cmu06g0005 836 SMART HOX_1 132 195 IPR001356 GO:0003677(InterPro)
Cmu06g0005 836 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 112 835 IPR042160 -
Cmu06g0005 836 Coils Coil 232 252 - -
Cmu06g0005 836 MobiDBLite consensus disorder prediction 94 141 - -
Cmu06g0005 836 SUPERFAMILY Homeodomain-like 116 191 IPR009057 -
Cmu06g0005 836 FunFam Homeobox-leucine zipper protein HDG1 121 207 - -
Cmu06g0005 836 SUPERFAMILY Bet v1-like 335 568 - -
Cmu06g0005 836 ProSiteProfiles START domain profile. 333 571 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2156 Cmu-Chr1:34187174 Cmu06g0005 Cmu-Chr6:97544 3.30E-190 dispersed
Cmu02g0186 Cmu-Chr2:1759032 Cmu06g0005 Cmu-Chr6:97544 2.10E-208 dispersed
Cmu03g1092 Cmu-Chr3:5380430 Cmu06g0005 Cmu-Chr6:97544 1.20E-187 dispersed
Cmu05g1514 Cmu-Chr5:23080365 Cmu06g0005 Cmu-Chr6:97544 3.60E-78 dispersed
Cmu06g0005 Cmu-Chr6:97544 Cmu07g1290 Cmu-Chr7:28178418 5.00E-150 dispersed
Cmu04g1307 Cmu-Chr4:27375643 Cmu06g0005 Cmu-Chr6:97544 1.00E-188 transposed
Cmu05g1171 Cmu-Chr5:11470375 Cmu06g0005 Cmu-Chr6:97544 2.70E-159 transposed
Cmu09g1115 Cmu-Chr9:11577959 Cmu06g0005 Cmu-Chr6:97544 5.00E-171 transposed
Cmu05g0200 Cmu-Chr5:1686371 Cmu06g0005 Cmu-Chr6:97544 3.70E-269 wgd
Cmu05g0894 Cmu-Chr5:8130458 Cmu06g0005 Cmu-Chr6:97544 4.00E-266 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6310 PF01852 START 2.50E-58 CL0209 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0005 K09338 - csv:101222248 1559.27