Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0022 ATGGGAAGAGGAAGAGTGGAACTGAAGAGAATAGAGAACAAAATCAACCGTCAAGTTACATTCTCAAAACGCCGAAACGGACTCCTGAAAAAGGCTTATGAACTGTCTGTTCTTTGCGATGCGGAAGTGGCTTTGATCATCTTCTCCACCCGCGGCAAGCTCTACGAATTTGGCAGTGCTGGTACCACCAAAACATTGGAGCGATATCAACGTTGTTGCTTCTCTCCTCAACACAATTATGCTGAACGACAAACCCAGAACTGGTTCCAGGAGATCTCAAAACTGAAAGCTAAATATGAATCTCTTTGCCGCACTCATAGGCATTTGCTTGGGGAAGATCTTGGACCATTGAGTGTAAAGGAGCTCCAAAATCTTGAGAAGCAACTTGAAGCAGCCCTTGCTCAAGCTAGACAAAGGAAGACACAGATTATGATTGAGCAGATGGAAGACCTGCGCAGAAAGGAGCGTCAACTTGGGGACCTCAACCGGGAGCTTAAGCTCAAGCTTGAAGCAGAGGGACAAAATCTTACAGCCATCCAAAGTTTTTGGAGCTCTGGGTCTGGCTCTGCTGAACATGCCAACAACTTCCCATTGCATCCTTTACCACCTAACCCTATCGAATGCCAACATGAACCCGTCTTACAAATCGGGTACCAGAATTATTTCTCAGAAGAGGGGCCATCTGTCCAAAAGAGCATGACATGTGAGACAAACTTCATACAAGGATGGGTTATTTGA 738 45.66 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFGSAGTTKTLERYQRCCFSPQHNYAERQTQNWFQEISKLKAKYESLCRTHRHLLGEDLGPLSVKELQNLEKQLEAALAQARQRKTQIMIEQMEDLRRKERQLGDLNRELKLKLEAEGQNLTAIQSFWSSGSGSAEHANNFPLHPLPPNPIECQHEPVLQIGYQNYFSEEGPSVQKSMTCETNFIQGWVI 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 250391 255143 + CmPI595203_06g000220.1 Cmu06g0022 417682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0022 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu06g0022 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu06g0022 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu06g0022 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu06g0022 245 Coils Coil 119 171 - -
Cmu06g0022 245 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cmu06g0022 245 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu06g0022 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu06g0022 245 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu06g0022 245 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cmu06g0022 245 FunFam MADS-box transcription factor 1 13 85 - -
Cmu06g0022 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 188 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cmu06g0022 245 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu06g0022 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu06g0022 245 Pfam K-box region 82 169 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g0986 Cmu-Chr3:4438623 Cmu06g0022 Cmu-Chr6:250391 2.40E-37 dispersed
Cmu06g0022 Cmu-Chr6:250391 Cmu06g0206 Cmu-Chr6:2209977 1.60E-56 dispersed
Cmu06g0022 Cmu-Chr6:250391 Cmu06g0023 Cmu-Chr6:256313 9.20E-36 tandem
Cmu05g1908 Cmu-Chr5:28966598 Cmu06g0022 Cmu-Chr6:250391 2.60E-25 transposed
Cmu01g0312 Cmu-Chr1:3215247 Cmu06g0022 Cmu-Chr6:250391 1.60E-33 wgd
Cmu05g0860 Cmu-Chr5:7775896 Cmu06g0022 Cmu-Chr6:250391 3.90E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6313 PF01486 K-box 5.40E-29 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0022 K09264 - csv:101219421 421.394