Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0032 ATGGATGGAATTACACCCCACAATCGCCCTCTTCCTCCTCCTTTCCTTTCCAAAGATCTCCATCTCCACCATGGATTATTCCACCACCACCAAAACTCCGACGACGACCAAACCGCCGGAGCTAAGAGAGATAGAGAGGACGAAAACCCCACCACGGCGGCGATGGCGGACAGCAAAGAATTATCTAATTCTTCATCTCGACGCCCACGTGGCCGACCAGCTGGTTCCAAAAACAAGCCAAAGCCACCCATTATAATTACTAGAGACAGCGCTAACGCCCTCAGATCTCATCTCATCGAAATCTCCACTGCCTCCGACATCGTAGATTCCCTCGCTGCCTTCGCACGCCGCCGCCAGCGTGGCGTTTGTATTCTAAGTGCCACGGGTACCGTCGCCAACGTCACTCTCCGGCAGCCGGCCTCCCCCGGCGCTGTCATCACCTTACATGGGAGATTTGAAATTCTCTCCCTCTCCGGCTCTTTCCTCCCACCGCCGGCTCCCCCGGCCGCCTCTGGTCTGACCGTCTACTTGGCTGGCGGGCAGGGGCAGGTCGTCGGTGGGAATGTAATCGGCCCACTTTCGGCGTCCGGTCCGGTGATTATCATGGCGGCTTCTTTTGGTAATGCTGCGTATGAACGGCTACCCATTGATGACGACGACGAAACGTCACCGGCAGCAGAGATTGCCGGACAACAAGCAGCACCGCCGCCGCCACAATTGATGGGGGATCCTAATGGGGGATTGTTTCATGGGATGGCGCAGAATGTTGTGAATTCTTCATGCCAATTGCCGGCAGAGGCGGCGGCGGCGTTTTGGGGAGGAGGTCGGCCACCGTATTGA 840 57.14 MDGITPHNRPLPPPFLSKDLHLHHGLFHHHQNSDDDQTAGAKRDREDENPTTAAMADSKELSNSSSRRPRGRPAGSKNKPKPPIIITRDSANALRSHLIEISTASDIVDSLAAFARRRQRGVCILSATGTVANVTLRQPASPGAVITLHGRFEILSLSGSFLPPPAPPAASGLTVYLAGGQGQVVGGNVIGPLSASGPVIIMAASFGNAAYERLPIDDDDETSPAAEIAGQQAAPPPPQLMGDPNGGLFHGMAQNVVNSSCQLPAEAAAAFWGGGRPPY 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 337616 338455 - CmPI595203_06g000320.1 Cmu06g0032 417692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0032 279 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 34 240 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Cmu06g0032 279 MobiDBLite consensus disorder prediction 55 71 - -
Cmu06g0032 279 FunFam AT-hook motif nuclear-localized protein 94 221 - -
Cmu06g0032 279 Pfam Plants and Prokaryotes Conserved (PCC) domain 95 206 IPR005175 -
Cmu06g0032 279 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 218 - -
Cmu06g0032 279 CDD DUF296 95 206 IPR005175 -
Cmu06g0032 279 ProSiteProfiles PPC domain profile profile. 91 231 IPR005175 -
Cmu06g0032 279 Gene3D - 94 224 - -
Cmu06g0032 279 MobiDBLite consensus disorder prediction 216 244 - -
Cmu06g0032 279 MobiDBLite consensus disorder prediction 28 53 - -
Cmu06g0032 279 MobiDBLite consensus disorder prediction 28 85 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0032 Cmu-Chr6:337616 Cmu09g1156 Cmu-Chr9:12476026 4.70E-60 dispersed
Cmu02g0322 Cmu-Chr2:2935985 Cmu06g0032 Cmu-Chr6:337616 8.40E-59 transposed
Cmu01g0336 Cmu-Chr1:3493306 Cmu06g0032 Cmu-Chr6:337616 9.60E-75 wgd
Cmu05g0237 Cmu-Chr5:2007412 Cmu06g0032 Cmu-Chr6:337616 5.50E-66 wgd
Cmu05g0837 Cmu-Chr5:7562881 Cmu06g0032 Cmu-Chr6:337616 2.10E-20 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0032 - - - 0.0