Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0034 ATGAGTGCCAACCCTAGTACTAGCGGCGGCGGTGGGCCGGGAACTGCCAGCGCCGGCGGTGGCGTCGGTGGCGGCGGAGGGGGGCCATGTGGAGCTTGCAAGTTTTTGAGAAGAAAGTGTGTTCCCGGTTGCATATTTGCCCCTTATTTCGACTCCGAGCAAGGCGCAGCCCATTTCGCAGCTGTGCACAAGGTGTTCGGAGCCAGCAACGTCTCGAAGCTCCTCCTTCATATTCCGGTCCACAAACGTCTCGATGCTGTCGTCACGATTTGTTACGAGGCTCAAGCACGCCTCCGAGACCCTGTCTACGGTTGCGTCGCTCACATCTTCGCTCTTCAACAACAGGTGGTGAGTTTACAAGCCGAGCTGACTTACCTTCAAGCCCATCTAGCAACACTGGAGCTTCCGTCCCCGCCGAACCCGCCGCCGCCACCTCCGCCACCAAGTTTTCCGGCGCAACCGCCGCTTTCCATCTCAGACCTGCCGTCGGCCTCCTCCCTGCCGGCCACTTACGACTTGTCGTCCCTCTTCGATCCAATGGCTCAGCCTGCATGGGCCATGCAACAGCAGCGGCTCGACCCCCGCCAGTTCGCCGGCGGAGGTGGCGGTTCATCAACGGCGGCAGGAGAAGGCGATCTTCAAGCCCTGGCTCGCGAACTCCTCCATAGACACGGCGCTCTGCCGTGCTCCGACGCCTCGTCGCCGCAATCGCTCTCTAAATGA 723 61.27 MSANPSTSGGGGPGTASAGGGVGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVSLQAELTYLQAHLATLELPSPPNPPPPPPPPSFPAQPPLSISDLPSASSLPATYDLSSLFDPMAQPAWAMQQQRLDPRQFAGGGGGSSTAAGEGDLQALARELLHRHGALPCSDASSPQSLSK 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 357722 360635 - CmPI595203_06g000340.1 Cmu06g0034 417694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0034 240 PANTHER LOB DOMAIN CONTAINING PROTEIN 26 147 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Cmu06g0034 240 MobiDBLite consensus disorder prediction 135 155 - -
Cmu06g0034 240 Pfam Lateral organ boundaries (LOB) domain 29 127 IPR004883 -
Cmu06g0034 240 MobiDBLite consensus disorder prediction 185 219 - -
Cmu06g0034 240 MobiDBLite consensus disorder prediction 134 158 - -
Cmu06g0034 240 ProSiteProfiles LOB domain profile. 28 130 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0034 Cmu-Chr6:357722 Cmu07g0147 Cmu-Chr7:1393721 7.60E-43 dispersed
Cmu06g0034 Cmu-Chr6:357722 Cmu06g0035 Cmu-Chr6:375472 7.90E-40 tandem
Cmu07g0390 Cmu-Chr7:3985140 Cmu06g0034 Cmu-Chr6:357722 1.10E-35 transposed
Cmu09g0771 Cmu-Chr9:7339267 Cmu06g0034 Cmu-Chr6:357722 5.10E-39 transposed
Cmu10g2332 Cmu-Chr10:29591422 Cmu06g0034 Cmu-Chr6:357722 2.70E-37 transposed
Cmu05g0241 Cmu-Chr5:2045489 Cmu06g0034 Cmu-Chr6:357722 3.70E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6315 PF03195 LOB 2.70E-38 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0034 K21994 - csv:101220603 378.637