Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu06g0046 | ATGAGGAGGGACGAAAGGCAGGAGGTCGTTGCGCGCTCCCGTATCGGCCCCAACATCCATCGCTTTGCCCAGTTGCCCTCTCCCTTCACTCCCAACCAGCATTCACCTCTTTCTTCCTCAGATCTACACTCTCCGTCGCCTTCACTCTCAGGTCCCAATTTGCTGGTTTGTAATCCATTTTGTTTCGATCTCTGTCTGGTGCCCTTCGTTCAATCTCGCAGGAGTCTTTCGCGAGTGTGTCAGAATGAAGGAAAGCTACATGTGCTGAATTTGGGAATTTGTGATGTTGTGCTTCGCCTGTACCCAATTTTGTGCTTTAAAAGACTAGAAGCATGGCTATGTGTTTCCTTTGAGATGGGGAGGAAGTGGAAGCTTTTCTTTCAGAGGCCTATCTATGAAAGGGAAATTGGGGGATTAACCAACCTCATCATCCTTTTGGAGAAGCAGAAAACAAGTAACCTTTCTAATCAACAACTATGGGCACTACATCTGTCTGGAATCTCACTGACAGTTTGGTCTTCCATAACGAAGAGCAGTCAAATGGATGGACCAACTGGTCGCAGTGGCGGTGGCATGGATATGAATTTACCGAACTATAAGCTTGGGAAAACCCTTGGCATTGGTTCATTTGGGAAAGTGAAAATTGCAGAGCATGCTTTAACTGGTCATAAAGTTGCTATTAAGATCCTTAACCGCCGAAAGATAAAAAACTTGGACATGGAAGAAAAAGTGAGAAGAGAGATTAAAATATTGAGACTGTTCATGCATCCGCACATTATACGGCTCTATGAGGTTATAGAGACCCCAGCAGACATTTATGTTGTGATGGAGTATGTAAAATCTGGGGAGCTCTTTGACTATATTGTAGAAAAGGGAAGGTTGCAGGAGGATGAAGCCCGTAATTTTTTCCAACAGATTATCTCTGGTGTGGAGTACTGCCACAGGAATATGGTAGTTCACAGAGATCTCAAGCCGGAGAACTTGCTTCTTGACTCCAAATGTAATGTGAAGATTGCTGATTTTGGTTTGAGCAATATAATGCGTGATGGTCACTTTCTGAAGACAAGTTGTGGGAGTCCCAATTATGCTGCCCCAGAGGTCATCTCGGGGAAATTATACGCTGGACCTGAAGTAGATGTGTGGAGTTGTGGTGTGATTTTGTATGCTCTTCTATGTGGCACTCTTCCTTTTGACGATGAAAACATTCCCAACCTGTTTAAGAAAATAAAGGGTGGAATCTATACTCTTCCAAGTCATTTATCATCTGGTGCTAGAGAACTGATTCCAAGCATGCTGGTGGTTGACCCAATGAAACGCATCACGATCCCTGAGATTCGGCAGCACCCATGGTTTCAGGCTCATCTTCCACGCTATTTAGCCGTGCCTCCACCTGATACAATGCAACAGGCAAAAAAGATTGATGAAGACATTCTTCAGGAAGTTGTAAAGATGGGATTTGACAGGAATCAGCTGGTGGAGTCTCTTCGTAACCGTATTCAAAATGAGGCTACTGTTGCTTATTATTTGTTGCTGGACAACCGGTTCCGTGTTTCTAGTGGCTATCTTGGAGCTGAGTTTCAGGAGACTATGGAAACAGGATTCAACCATATGCACCCTGGTGATCCTACAAGTCCTGCTGTAGGACACCGTCTTCCTGGGTATATGGATTACCAAGGAATGGGCTTAAGATCACAGTTTCCCGTTGAGAGGAAGTGGGCCCTGGGATTACAGTCTCGAGCTCATCCTCGTGAAATTATGACTGAAGTTCTTAAAGCCCTACGAGAGCTCAATGTGGCTTGGAAGAAGATTGGGCACTATAATATGAAATGTAGATGGTTGCCTGGAATTCCAGGCCATCATGAAGGCATGATTAACAACCCTGTGCATAGTAATCATTACTTTGGGGACGAGTCTACCATCATTGAAAACGATGGCGTTGTAAAATCGCCGAATGTTATTAAGTTTGAAGTACAGCTGTACAAAACACGCGAAGAGAAGTATTTGCTTGATCTACAGAGGGTTCAAGGCCCCCAGTTCCTTTTCCTGGATCTTTGTGCTGCTTTCCTTGCCCAGCTCCGAAATCTTAGTTCCTCTTCCCCTTCCCTCTTTAGATGGATAGTTCAATCTTGTGTAAATCTGATTTTCGGTAGTAGAAGTTGTCGATCTCGGTGTCCAATATTGATTGGTGATGCCCTTGCTCCTTGGCTGTCGTTTTCTTGTCGTCAAGATTCCCGAAATCCTTTCCTCTTTGAACTCGCAAAGATGACTCAAGACGCCGAGATGAAAGAGCTTCCTGCTCCATTGTCGTCTTCTTCCTCTTCAGCTTCCCCCTCAACTCTACAACATTTGAAAGAGATTGTGTCGCTCATTGAGACCGGTGCCTATGCTCGGGAGGTTCGGCGGATTGTTCGTGCCATTCGTCTGACTATGGCGTTGAGGCGGAAGTTGAAGGCTTCTGTCGTTTCTCAATTTCTGAATCTTGTTCTCCCCCCAGGGTCCGAGGTGCACACTAGGTTATCGTCATTTCTTCCAAAGGAGGATGACTGTGAAATGGATGTTGACACGGCAACACAAGCTCCTGCGAAACACCCTTTGCCCGAGATAGAGATATTTTGCTACTTGATTGTGCTAATATTTTTGATTGATCAGAAGAAATATGCTGATGCTAAAGCTTGCGCCTCCGCAAGCATTGCTCGGGTTAAGAACCTTAATAGGAGAACAGTCGATGTTTTAGCATCCAGGCTCTACTTCTATTATTCCCTCAGCTATGAACTCACTGGCGATCTTGCTGAAATAAGGGGCAACCTCCTAGCCCTGCATCGCATTGCAACCTTGCGCCATGATGAATTGGGTCAGGAAACCCTCCTTAACCTTCTACTTCGTAATTACCTCCACTACAACCTTTATGATCAAGCTGAGAAGTTGAGGTCCAAGGCACCCCGGTTTGAAGCTCACTCAAATCAGCAGTTCTGTAGATACCTATTTTACCTTGGCAAGATCAGGACCATTCAGCTGGAGTACACAGATGCAAAGGAGTCTCTTCTACAAGCTGCTCGGAAAGCACCCATTGCAGCCCTTGGTTTTCGAGTGCAATGCAACAAATGGGCAATCATTGTTCGCTTGCTGCTAGGAGAAATCCCTGAGAGGACCGTTTTCATGCAGAAAGGCATGGAGACAGCTCTGAGGCCATACTTTGAACTTACAAATGCTGTGAGAATTGGTGACTTGGAGCTTTTCAGGACAGTTGCCGAGAAGTTCTCTGGCACTTTCAGCTCAGATCGAACTAACAACTTGATCGTGAGGCTGCGACACAATGTCATTAGGACTGGGCTTCGCAACATTAGCATTTCTTATTCACGAATTTCTCTGGTTGATGTTGCTAAAAAGCTTAGGTTGGACTCAGCAAATCCTGTTGCTGATGCTGAGAGCATCGTCTCCAAGGCAATCCGAGATGGAGCAATTGATGCAACAGTCGATCATGGGAAGGGATGGATGGTATCAAAGGAGACTGGTGATATTTACTCTACCAATGAACCTCAGCTTGCTTTCAACTCGAGGATTGCGTTTTGCCTGAATATGCATAATGAGGCAGTTCGTGCCCTTCGGTTTCCACCAAATTCACACAAGGAAAAAGAAAGCGCCGAGAAAAGAAGAGAAAGACAACAGCAGGAGCAAGAACTTGCAAAACACATAGCCGAAGAAGATGATGACGACTTTTAG | 3720 | 45.22 | MRRDERQEVVARSRIGPNIHRFAQLPSPFTPNQHSPLSSSDLHSPSPSLSGPNLLVCNPFCFDLCLVPFVQSRRSLSRVCQNEGKLHVLNLGICDVVLRLYPILCFKRLEAWLCVSFEMGRKWKLFFQRPIYEREIGGLTNLIILLEKQKTSNLSNQQLWALHLSGISLTVWSSITKSSQMDGPTGRSGGGMDMNLPNYKLGKTLGIGSFGKVKIAEHALTGHKVAIKILNRRKIKNLDMEEKVRREIKILRLFMHPHIIRLYEVIETPADIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSSGARELIPSMLVVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEDILQEVVKMGFDRNQLVESLRNRIQNEATVAYYLLLDNRFRVSSGYLGAEFQETMETGFNHMHPGDPTSPAVGHRLPGYMDYQGMGLRSQFPVERKWALGLQSRAHPREIMTEVLKALRELNVAWKKIGHYNMKCRWLPGIPGHHEGMINNPVHSNHYFGDESTIIENDGVVKSPNVIKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRNLSSSSPSLFRWIVQSCVNLIFGSRSCRSRCPILIGDALAPWLSFSCRQDSRNPFLFELAKMTQDAEMKELPAPLSSSSSSASPSTLQHLKEIVSLIETGAYAREVRRIVRAIRLTMALRRKLKASVVSQFLNLVLPPGSEVHTRLSSFLPKEDDCEMDVDTATQAPAKHPLPEIEIFCYLIVLIFLIDQKKYADAKACASASIARVKNLNRRTVDVLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPIAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMETALRPYFELTNAVRIGDLELFRTVAEKFSGTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLVDVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHGKGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNSHKEKESAEKRRERQQQEQELAKHIAEEDDDDF | 1239 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 432878 | 447581 | - | CmPI595203_06g000460.1 | Cmu06g0046 | 417706 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu06g0046 | 1239 | Pfam | Kinase associated domain 1 | 652 | 693 | IPR001772 | - | |
Cmu06g0046 | 1239 | ProSiteProfiles | Protein kinase domain profile. | 199 | 451 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu06g0046 | 1239 | FunFam | 26S proteasome non-ATPase regulatory subunit 3 | 872 | 1195 | - | - | |
Cmu06g0046 | 1239 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 318 | 330 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu06g0046 | 1239 | ProSiteProfiles | Kinase associated domain 1 (KA1) profile. | 646 | 694 | IPR001772 | - | |
Cmu06g0046 | 1239 | SMART | PCI/PINT associated module | 926 | 1097 | - | - | |
Cmu06g0046 | 1239 | PANTHER | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 | 755 | 1235 | IPR050756 | GO:0006511(PANTHER)|GO:0008541(PANTHER) | |
Cmu06g0046 | 1239 | MobiDBLite | consensus disorder prediction | 1203 | 1232 | - | - | |
Cmu06g0046 | 1239 | FunFam | Non-specific serine/threonine protein kinase | 189 | 278 | - | - | |
Cmu06g0046 | 1239 | SUPERFAMILY | Protein kinase-like (PK-like) | 196 | 469 | IPR011009 | - | |
Cmu06g0046 | 1239 | CDD | STKc_AMPK_alpha | 196 | 451 | - | - | |
Cmu06g0046 | 1239 | CDD | AMPKA_C | 569 | 692 | - | - | |
Cmu06g0046 | 1239 | Pfam | UBA/TS-N domain | 473 | 509 | IPR015940 | - | |
Cmu06g0046 | 1239 | Gene3D | Kinase associated domain 1, KA1 | 575 | 694 | - | - | |
Cmu06g0046 | 1239 | CDD | UBA_SnRK1_plant | 473 | 513 | - | - | |
Cmu06g0046 | 1239 | Pfam | PCI domain | 1089 | 1168 | IPR000717 | - | |
Cmu06g0046 | 1239 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 1097 | 1190 | IPR000717 | - | |
Cmu06g0046 | 1239 | FunFam | Non-specific serine/threonine protein kinase | 575 | 693 | - | - | |
Cmu06g0046 | 1239 | Gene3D | - | 1006 | 1191 | - | - | |
Cmu06g0046 | 1239 | ProSitePatterns | Protein kinases ATP-binding region signature. | 205 | 228 | IPR017441 | GO:0005524(InterPro) | |
Cmu06g0046 | 1239 | Coils | Coil | 1206 | 1233 | - | - | |
Cmu06g0046 | 1239 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 472 | 512 | IPR015940 | - | |
Cmu06g0046 | 1239 | SUPERFAMILY | KA1-like | 508 | 694 | IPR028375 | - | |
Cmu06g0046 | 1239 | FunFam | Non-specific serine/threonine protein kinase | 190 | 529 | - | - | |
Cmu06g0046 | 1239 | SUPERFAMILY | Winged helix DNA-binding domain | 1099 | 1173 | IPR036390 | - | |
Cmu06g0046 | 1239 | SMART | serkin_6 | 199 | 451 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu06g0046 | 1239 | Pfam | Protein kinase domain | 199 | 451 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu06g0046 | 1239 | Gene3D | Transferase(Phosphotransferase) domain 1 | 192 | 530 | - | - | |
Cmu06g0046 | 1239 | ProSiteProfiles | PCI domain profile. | 991 | 1172 | IPR000717 | - | |
Cmu06g0046 | 1239 | MobiDBLite | consensus disorder prediction | 1203 | 1239 | - | - | |
Cmu06g0046 | 1239 | SMART | uba_6 | 474 | 511 | IPR015940 | - | |
Cmu06g0046 | 1239 | Pfam | Proteasome regulatory subunit C-terminal | 1172 | 1238 | IPR013586 | GO:0000502(InterPro)|GO:0030234(InterPro)|GO:0042176(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu02g0421 | Cmu-Chr2:3842256 | Cmu06g0046 | Cmu-Chr6:432878 | 1.20E-252 | dispersed | |
Cmu02g2103 | Cmu-Chr2:34658069 | Cmu06g0046 | Cmu-Chr6:432878 | 8.90E-39 | dispersed | |
Cmu06g0046 | Cmu-Chr6:432878 | Cmu11g0053 | Cmu-Chr11:1023803 | 2.00E-195 | dispersed | |
Cmu06g0046 | Cmu-Chr6:432878 | Cmu02g2394 | Cmu-Chr2:37406086 | 5.60E-73 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
75580 | PF00069 | Pkinase | 1.50E-79 | CL0016 | Cmu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu06g0046 | K07198 | - | csv:101211720 | 1009.59 |