Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0051 ATGTCTAATGTTGAGGGGGTACATGGGTGGGCTAAGCCGAGGTCGTTGCGCGCTCCCGCATCGGTCCCAACATCCATCGGTACGCCCCGTTGCCCTCTCCCTTCACTCCCAACCAGCATTCACCTCTTTCTTCCTCAGATCTACACTCTCCATCGCCCTCACTCTCAGTTGAAGATGCCATCGGCTCAAGATCCGTTCTATGTTGTAAAAGACGAGATTCAAGAATCTATTGATAAACTGCAATCCAGCTTTCACCAATGGGAAAGGATATCTTCTGATTCAGGAGAGAGAATACAACAAACAAAAGAGTTGCTTGCTTCTTGTGAAAGCATTGAATGGCAGGTGGACGAGTTGGACAAAGCTATTGCTGTGGCAGCTAGAGATCCATCTTGGTATGGCATTGATGATGCAGAACTTGAAAAACGAAGGAGATGGACAAGTACTGCTAGAACACAGGTTGGAAATGTTAAGAAAGTAGTAGGAGCTGGGAAGGAGCAAACGGGAACTGCTAGTGCAAGTGGGATGCGTCGAGAATTGATGAGACTACCTAATGCACATGAAACAGACAGATCAAACTTATATACAGCCAACCAAGCAAATGATGACTTCATCACATCCGAATCAGATAGACAGCTGCTTCTAATAAAGCAGCAGGACGAGGAGTTGGATGAGTTGAGTGCAAGCGTGGAGAGAATTGGAGGTGTTGGGCTTACAATACATGAAGAGCTCCTTGCACAGGATAAAATTATCGACGACCTAGGAATGGAAATGGACAGTACATCAAATCGTCTTGATTTTGTTCAGAAAAAAGTAGCAGTGGTCATGAAGAAGGCCAGCGCCAAGGGGCAGATAATGATGATATTGTTCTTGGTGGCTCTGTTCATCATCCTTTTTGTGTTGGTGTTCCTCACCTAG 915 45.68 MSNVEGVHGWAKPRSLRAPASVPTSIGTPRCPLPSLPTSIHLFLPQIYTLHRPHSQLKMPSAQDPFYVVKDEIQESIDKLQSSFHQWERISSDSGERIQQTKELLASCESIEWQVDELDKAIAVAARDPSWYGIDDAELEKRRRWTSTARTQVGNVKKVVGAGKEQTGTASASGMRRELMRLPNAHETDRSNLYTANQANDDFITSESDRQLLLIKQQDEELDELSASVERIGGVGLTIHEELLAQDKIIDDLGMEMDSTSNRLDFVQKKVAVVMKKASAKGQIMMILFLVALFIILFVLVFLT 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 481408 485714 - CmPI595203_06g000510.1 Cmu06g0051 417711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0051 304 Pfam Syntaxin 6, N-terminal 64 157 IPR015260 GO:0016020(InterPro)|GO:0048193(InterPro)
Cmu06g0051 304 PANTHER SYNTAXIN 66 291 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cmu06g0051 304 FunFam syntaxin-61 isoform X1 215 276 - -
Cmu06g0051 304 ProSitePatterns Syntaxin / epimorphin family signature. 218 257 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cmu06g0051 304 Pfam SNARE domain 249 300 IPR000727 -
Cmu06g0051 304 Gene3D - 60 162 - -
Cmu06g0051 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 212 274 IPR000727 -
Cmu06g0051 304 CDD SNARE_NTD_AtSYP61-like 63 160 - -
Cmu06g0051 304 CDD SNARE_Qc 215 272 - -
Cmu06g0051 304 Gene3D - 219 283 - -
Cmu06g0051 304 SMART tSNARE_6 207 274 IPR000727 -
Cmu06g0051 304 SUPERFAMILY SNARE fusion complex 211 274 - -
Cmu06g0051 304 SUPERFAMILY t-snare proteins 63 158 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cmu06g0051 304 FunFam Syntaxin 10 61 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0051 Cmu-Chr6:481408 Cmu10g1294 Cmu-Chr10:5817646 5.50E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0051 K08500 - csv:101212527 420.624