Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0068 ATGGCTACTTTAAACTTAGGCTCTGCTTCTCACTTTGTTGACCAGCTTCAGCAACGCCCTGATCTCCACCTAGAATCTCCCCCAACTTCTGACCATGTCAACCACTTCAACGGCAGCGGCGGCTCCGGCGGTAGCGGCGATGTCATGGTCCGTCGCCCACGGGGTCGCCCGGCCGGCTCCAAGAACAAGCCCAAGCCACCCGTGATCATCACGCGCGAGAGCGCCAACACACTCCGAGCTCATATCTTGGAGGTCGGTGGTGGATGCGACGTCTTCGAGGCGGTGGCCGGCTATGCTCGACGGCGACAACGGGGGATCTGTGTGTTGAGTGGGAGTGGGATTGTGAATAATGTTAGCTTGCGACAACCGGCGGCTGCTGGATCGGTGTTGACGTTGCAAGGGAGGTTCGAGATTTTGTCGTTGTCGGGATCGTTCCTACCGCCGCCTGCTCCGCCAGGTGCTACCAGTCTTACAATTTTCTTGGCCGGAGGACAAGGGCAAGTGGTGGGAGGGAATGTGGTGGGAGCTTTGATCGCGTCGGGGCCGGTCATCGTCATAGCATCGTCATTTAGTAACGTTGCATACGAGAGGTTGCCGTTGGATGAAGAAGAATTGCCGATGCAGGTGGGTGGAGGCGATGGTGACGGAGGCGACGGTGGCGGTGACGGTCACAACAACCCTTTTCCTGATGCATCTTCGGGTTTGCCGTTTCTAAATCTGCCTATGAACATGCCAAATCAGAATCAATTTTTCGGTTGA 759 56.52 MATLNLGSASHFVDQLQQRPDLHLESPPTSDHVNHFNGSGGSGGSGDVMVRRPRGRPAGSKNKPKPPVIITRESANTLRAHILEVGGGCDVFEAVAGYARRRQRGICVLSGSGIVNNVSLRQPAAAGSVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGNVVGALIASGPVIVIASSFSNVAYERLPLDEEELPMQVGGGDGDGGDGGGDGHNNPFPDASSGLPFLNLPMNMPNQNQFFG 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 641386 642490 + CmPI595203_06g000680.1 Cmu06g0068 417728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0068 252 SUPERFAMILY AF0104/ALDC/Ptd012-like 75 209 - -
Cmu06g0068 252 Gene3D - 78 209 - -
Cmu06g0068 252 MobiDBLite consensus disorder prediction 205 232 - -
Cmu06g0068 252 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 38 215 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cmu06g0068 252 CDD DUF296 79 162 IPR005175 -
Cmu06g0068 252 FunFam AT-hook motif nuclear-localized protein 78 205 - -
Cmu06g0068 252 ProSiteProfiles PPC domain profile profile. 75 211 IPR005175 -
Cmu06g0068 252 MobiDBLite consensus disorder prediction 22 68 - -
Cmu06g0068 252 Pfam Plants and Prokaryotes Conserved (PCC) domain 79 191 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0068 Cmu-Chr6:641386 Cmu10g1022 Cmu-Chr10:2183337 4.50E-78 dispersed
Cmu05g0282 Cmu-Chr5:2403443 Cmu06g0068 Cmu-Chr6:641386 4.40E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0068 - - - 0.0