Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0090 ATGATTAAGGGCTTTCTTCACCAACTTCAGCTTTCTTCTCCTCCAACCGAGATGGAAGTGCAAGATCATGGTCACATAATTGAAGTATGTGGAGATGTGCAAGCTGTAGGGCCTAGCACTGTGGGAAGTAAAATTTGTGGGGATGCACCCTCTTGTGGATTTTCTGATGCAAAAAGCAGTTCAAAAGATGCAAAGGAGCGATCTGCGTCTATGCGGAAGCTTTGCATAGCAGTTGTTCTCTGCATCGTTTTTATGAGTGTAGAAGTAGTCGGAGGTATTAAAGCAAACAGTCTTGCAATATTGACTGATGCTGCTCATTTGTTGTCAGATGTTGCTGCTTTTGCCATTTCTTTATTCTCACTCTGGGCCTCTGGTTGGGAGGCAACTCCACGTCAGTCATATGGTTTCTTCCGCATTGAAATACTCGGTGCTCTTGTTTCCATTCAGATGATCTGGCTTCTAGCTGGAATTCTTGTTTACGAAGCTATCGTCCGACTTATAAATGGTCCGGGAGAAGTCAAGGGGTTGCTCATGTTTGCTGTTTCGACATTTGGGTTAGTTGTTAACATAGCTATGGCTCTGCTGCTTGGTCACGAACATGGTCATGCCCATTCTCATGGTCACAGTCATGGACATGGTGAGCATGGCCATGGTCATGGCGGCCATGAACATGGTGATGAAGATCATAGGCATCATCATGGAATAAGTGTGACCACCCACCACCATCACCACCACCACCACCACCATGGAGAAGAGAAGGGAGCTGGCAACGAAGGTGTTGAGCAGGAGCAGCAGCAGCAGCAGCATGACCACAAGGAATCAGTAGCTACACCCTTGCTTGAGAGTTGTGTTGACGACGGAAATCCTTCACGAAAGGTTACCAAGACGCAAAAGAAACAACGAAACATAAACGTACAGGGGGCTTATCTTCATGTACTTGGAGATTCCATCCAAAGCATCGGGGTAATGATCGGCGGGGCAATCATATGGTATAAACCGGAATACAAGATTCTTGATCTGATATGCACCCTCATTTTCTCTGCAATTGTGCTGTGCACAACAATTCAAATGCTTCGAAATATCCTCGAGGTTTTGATGGAGAGCACGCCGCGAGAGGTGGACGCAACAAAGCTTGAGAAGGGTTTGTGCGAGATGGAGGAGGTAGTTGCAATCCATGAACTGCACATATGGGCCATAACTGTTGGGAAGATTCTATTGGCATGCCATGTTATAATAAAGCCAGAGGCAAATGCCGACATGGTATTGGACAAGGTTATTGAGTATATTAGGAGAGAGTACAACATCAGCCATGTCACCATTCAGATAGAGCGCCAGTAG 1338 46.04 MIKGFLHQLQLSSPPTEMEVQDHGHIIEVCGDVQAVGPSTVGSKICGDAPSCGFSDAKSSSKDAKERSASMRKLCIAVVLCIVFMSVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWASGWEATPRQSYGFFRIEILGALVSIQMIWLLAGILVYEAIVRLINGPGEVKGLLMFAVSTFGLVVNIAMALLLGHEHGHAHSHGHSHGHGEHGHGHGGHEHGDEDHRHHHGISVTTHHHHHHHHHHGEEKGAGNEGVEQEQQQQQHDHKESVATPLLESCVDDGNPSRKVTKTQKKQRNINVQGAYLHVLGDSIQSIGVMIGGAIIWYKPEYKILDLICTLIFSAIVLCTTIQMLRNILEVLMESTPREVDATKLEKGLCEMEEVVAIHELHIWAITVGKILLACHVIIKPEANADMVLDKVIEYIRREYNISHVTIQIERQ 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 828683 835097 - CmPI595203_06g000900.1 Cmu06g0090 417750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0090 445 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 374 443 IPR036837 -
Cmu06g0090 445 MobiDBLite consensus disorder prediction 251 274 - -
Cmu06g0090 445 Gene3D Cation efflux protein transmembrane domain 70 365 IPR027469 -
Cmu06g0090 445 NCBIfam cation diffusion facilitator family transporter 71 445 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu06g0090 445 MobiDBLite consensus disorder prediction 214 234 - -
Cmu06g0090 445 MobiDBLite consensus disorder prediction 235 250 - -
Cmu06g0090 445 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 40 444 IPR050681 GO:0005385(PANTHER)|GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0071577(PANTHER)
Cmu06g0090 445 Pfam Cation efflux family 75 366 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu06g0090 445 MobiDBLite consensus disorder prediction 201 274 - -
Cmu06g0090 445 SUPERFAMILY Cation efflux protein transmembrane domain-like 68 367 IPR027469 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g0740 Cmu-Chr3:1569278 Cmu06g0090 Cmu-Chr6:828683 4.40E-72 dispersed
Cmu06g0090 Cmu-Chr6:828683 Cmu10g2220 Cmu-Chr10:28334480 9.90E-12 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0090 K14689 - csv:101213602 637.876