Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0100 ATGGACATAACTTTTTTCACAGCCAAAGAAGCCCCCACAAGCTTCTTCAACCAAAGCCATGATCATCATCTTCATCATCTTCACTTCTCCAACTTAGACATGCAAAGCTCCACCAGCCATTCGTCGGAGTACTCACCGGAAAACTCTCCATCCGCTGCTGCTGCCGCCACCACAGCTGCTGCCACGGGAAAATGGGCCTCCACCCTTCTCAAGGAGTGTGCTAGAGCTATCTCTGAAAAGGACTCCAACAAAATCCACCATTTTCTTTGGATGTTGAACGAGCTGGCTTCCCCTTATGGTGACTCTGATCAAAAAATGGCTTCCTACTTCTTGCAAGCTCTCTTCTGCAGAGCCACAGAAACTGGCCTTAGCTGCTACAAAACCCTCGTCGCTGTCGCCGAGAAGAATCACAACTTTGACTCTGCCCTGAGGCTCATCCTCAAGTTTCAAGAGGCAAGTCCATGGACAACATTCGGGCATGTGGCATCGAACGGTGCGATTCTCGAAGCGCTCGAGGGAGAAACGAAGCTCCACATCATCGACATAAGCAACACCCTTTGCACCCAATGGCCAACCCTACTAGAATCCCTAGCCACACGCAATGATGACACCCCACATCTAAAGCTAACAGTGGTGACAACAACAAGCATAGTGAAGTGTTTAATGAAGGAAATAGGGCAAAGAATGGAGAAATTTGCAAGGCTAATGGGAGTCCCCTTTGAATTCAACCCTATAACAAATCTCAACCACTTAACTGACCTCACAAATGAAGCCCTCAAAGTAGAAGAAGGTGAAGCCATTGCCATAAATTGCATTGGAGCCTTAAGAAGAGTGAGAGTTGAAGAAAGAAACAATGTGATTTCAATGTTGAAATCACTAAAGCCTAGAGTTTTAACAATTGTAGAGGAAGAAGCTGATTTCATAAGCTCCAAAAATGACTTTTTGAAGTGCTTTGAAGAGTGTCTTAGATTTTACACTCTCTACTTTGAGATGTTAGAAGAGAGCTTTGTGGCAACAAGCAATGAGAGATTGGTTTTGGAAAGAGAATGTTCAAGAAGCATTGTGAGGCTTTTGGGGTGTGATCAAGAAATTAGTGAAGAAGAAATGGGGAGTGAGAGAAGAGAAAAAGGAAAGCAATGGATAAAAAGGCTCAAACAAGCAACTTTTTCATCAGCTGATTTTAGTGAAGATGTAATGGATGATGTTAAGGCTTTGCTCAAGCGGTACAAACCCGGTTGGGCATTGTGGCGTCCAACCGCAGCCACTACCGGAGAAGAAGAAGAAGGTGGTGGTGGTGATGATTCAGGTGGAATTTACTTGACATGGAAGGAAGAACCAGTGGTGTGGGTTTCAGCATGGAAACCCTAA 1368 44.81 MDITFFTAKEAPTSFFNQSHDHHLHHLHFSNLDMQSSTSHSSEYSPENSPSAAAAATTAAATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCRATETGLSCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFARLMGVPFEFNPITNLNHLTDLTNEALKVEEGEAIAINCIGALRRVRVEERNNVISMLKSLKPRVLTIVEEEADFISSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLVLERECSRSIVRLLGCDQEISEEEMGSERREKGKQWIKRLKQATFSSADFSEDVMDDVKALLKRYKPGWALWRPTAATTGEEEEGGGGDDSGGIYLTWKEEPVVWVSAWKP 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 915113 916880 - CmPI595203_06g001000.1 Cmu06g0100 417760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0100 455 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 51 453 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cmu06g0100 455 ProSiteProfiles GRAS family profile. 57 454 IPR005202 -
Cmu06g0100 455 Pfam GRAS domain family 68 454 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0161 Cmu-Chr2:1595060 Cmu06g0100 Cmu-Chr6:915113 1.80E-42 dispersed
Cmu02g1264 Cmu-Chr2:25706585 Cmu06g0100 Cmu-Chr6:915113 1.10E-99 dispersed
Cmu06g0100 Cmu-Chr6:915113 Cmu11g0954 Cmu-Chr11:13186053 2.90E-35 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6320 PF03514 GRAS 3.10E-95 CL0063 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0100 K27743 - csv:101206730 777.319