Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0157 ATGACGCAGCCACAGCTGCCCATCAGCATTAGTAGAAACGATAGTGCTCAGTTGGTGATTGAGGTGCAGGAAAATCTCAATAAACTGGGGAAATCAGTACTTGCTACGGACGAGAATACCTTCAATCGTTCGATCTACAGAATACCAACATTCATGAGAGAAGTTCATCCGAAAGCGTTCGAGCCACAGTTGGTGTCGTTTGGGCCATACCACCATGGGAAACCACAATATGCTTCAATGGAACTGGAAAAACAGAAAGCGTTTCGCCGTTTGAAAACCAACCCAGAGATGTTAGAGTCGATTGTGCAGACTGTGACTGACAATTTGCAAAACCTGTTGGGAGCATACGATAAGCTAATTGAGGGTGAATGGGCGAAACGTCCTGCCAAGTTCTTGGAGGTGTTGATTGTGGATGGCTGTTTCATGCTAAGTTTCCTCAAGAAATGTCCCCCCTCCCTAAGTTCTATGAGTTGGGATATAAAGCGGGACATGCTTCTGCTTGAGAATCAGCTACCCATGCTGCTTCTTGACGATTTGTATTCCATTTTACCAAACATGGATGGAAGACTGGCATGGTTTATATGCAAGTCAATGTGCTTCGCATCAGGGGAAGCAGTATCAATGGGAGGAAACTTGCACATTTTGGATATGTATAGAATGTCACTATTGGGTACTACGATATTAGAGAATAAGGATGGTAGTATGGAGAGAAAAACGAAGAAATCCGGGCCAGAATATCAAGTGATTCGACATGCAACACAGCTTCGTGACGCGGGGATAGATTTCCAGGAAAGCGGCACAAAGAGCCTTACTGACGTGAGTTTTGACTCCAAAAAAGGGGTGCTGAAAATTCCACAATTAGTGGTGGACGATGATAGTGAAGCCAGTTTATTAAATGTGATGGCATTTGAGAAACTACATGAGGAGGCTGGAAGCGAAGTCACATCTTTCGTAGTATTGATGAACAATTTGATAGACGTGGATGAAGATGTGGCTTTGCTGTCTTCTAAAAATATATTAGCTAACGCGCTTGGGGATGATCAAAGTGCGGCGGAGTTGTTTGGTTCGCTTGGGAAAGGGGCGGCTATGGATTTGGAAAGCCACATTACAGAGGTGCATCACCAGGTGAATCTGCATTGCCGCCGGCCATGGAATGAATGGTGTGCAAGTCTCAAACATAATTACTTTCATAACCCATGGGCCATTATCTCACTCGTTGCCGCTATTCTCGGTTTCGCCATCCTTATTGTTCAAGCCGTCTACCAAATTGTCTCGATATTAAGAGCCGCACACGATGTGATTCTCATTCTCATATCACTGTTTCTTGTTGTCCCTCCCGAGCATAATCGGTGCCCCCCTCCTCAAATTGCTTACCAACTTCAACTTCCCAACTGCGATCTTCAATCTCTCTCAGATGCTAATGACTCTTCTTTGGGGGGTTTAGTCTGGTCTTCTGCAAAAGAAGAGGGCGATCTCCTTATTGAGCACAGGCCCCAGGAAGATTCCGCCGCCGCCACACCTGTCGTTCACGATGCCGATGGCTTTGATGGCGGCTTTTCTTCCCTCGATAGCATGTTACAGTGGGCTATAGGCCATTCTGATCCTGCAAAACTGAAGGATACTGCACAGGATGTGAAACGATTGTCTCCAAGTGAGATAAAGAAGCGTCAAGAAGAAATTAAGGACCTAATAGAGGAGTTGAAGGTGCCATCAGATGCAAAGCTGATGCAAATTGCGATAGATGACTTGAAAAATTCCTCTCTATCATTGGAAGATCGCCATCGGGCATTACAGGAGCTTTTACTACTCGTTGAGCCAATAGACAATGCAAATGATTTGGACAAACTTGGGGGCCTTGCTGTGCTTATTCATGAGCTTAATCATTTCGATCCTGATATTAGGAAAGTTGCAGCGTGGATTCTTGGAAAAGCAAGTCAGAATAACCCTATTGTTCAAAAGCAGGTATTGGAACTCGGGGCACTAGCAAAATTAGTAACGATGGTAAAATCTGATTTTGTAGAAGAAGCCATCAAGGCATTGTATGCTATTTCATCATTGGTTCAAAATAATTTATCTGGCCAGGAATTATTCTATGCCGAAGCTGGAGAAACCATGCTTCAGGATATTTTAAGCAACTCGAGCATGGATATCAGATTGCAAAAGAAAGCTGTTTTTCTTGCAAGTGATTTGGCTGTGACACAACTAGAAAAAACAGATGAAGCTGAAAGGCCATTTTTTGGAGATCGCCTTTTCTTGAAGTCTGTGGTTGATCTCATCCATTCCACAGACATTGATCTCCAGGAGAAGGCCCTCATTGCTCTAAAGAACCTCCTGCTTTTGAGAACAACGAAAGCTCAAGTTTTAAGAGAATTTTGTGGGTTGGATGTTGCTTTGGAGAGGATGAGGGTGAAGCTGGAGGTATTAAAGGAAGGGGAAGATCACCGAGATTATGCAATGGATGTGGAAGATCTACGAAGCCAAGTGGAGTTACTTTTCCTTGAAAAGCTGGGAAAGAGAATGCAGCGGCCGGTAGCAGCTCTCTCTCACGAACATCCATCCCGGCGGCATCTTTCTCTCTCGAGCACCCATCCCACCGTATTTTCATTTATTACGATGGCTGATGCTCATGAAACTGATAAGAACATTGAAATATGGAAAATTAAGAAGTTGATTAAAGCACTTGAAGCTGCAAGAGGTAATGGGACTAGCATGATCTCTCTCATCATGCCTCCGCGTGATCAAATATCTCGTGTTACTAAGATGCTTGGTGATGAATTTGGAACTGCTTCGAACATTAAGAGCAGGGTAAATCGTCAATCTGTTTTGGGTGCTATCACGTCTGCTCAGCAGAGACTCAAGCTGTATAACAAGGTTCCTCCAAATGGGCTTGTGCTTTATACTGGGACAATCGTGACTGAAGATGGAAAAGAAAAGAAAGTCACAATTGATTTTGAGCCTTTCAGGCCTATAAATGCATCTCTTTATCTCTGCGACAACAAGTTCCACACGGAAGCCCTGAATGAACTGTTAGAATCTGATGACAAGTTTGGCTTCATTGTCATGGATGGTAATGGAACACTCTTTGGCACATTGAGTGGTAACACACGTGAAGTCCTTCACAAATTTAGTGTCGACCTTCCTAAGAAACATGGAAGAGGAGGTCAGTCAGCACTTAGGTTTGCCCGTCTTCGGATGGAGAAGCGGCACAACTATGTGAGGAAAACAGCAGAGCTTGCAACCCAGTTCTTTATTAATCCTGCCACTAGTCAACCCAATGTTGCAGGATTGATACTGGCTGGATCAGCTGACTTCAAAACAGAGCTCAGTCAATCCGACATGTTTGATCCTCGTCTTCAGGCCAAAATACTTAATGTTGTCGATGTCTCTTATGGAGGGGAAAATGGATTCAATCAAGCTATTGAATTGTCATCCGAGATCTTGTCTAATGTAAAATTTATACAGGAGAAGCGCTTGATTGGAAAATACTTTGAAGAGATTAGCCAGGACACAGGGAAGTATGTTTTTGGTGTTGACGACACACTGAAAGCTCTGGAGATGGGTGCTGTTGAAATACTTATTGTTTGGGAAAATTTAGATATCAATAGGTATGTATTAAAGAATGCTGCCACTGGTGAGATTATTATAAAGCATTTGAACAAGGAACAGGAAGCCAATCAGAGCAACTTTCGTGACACCGCCACCTCTGCTGAGTTGGAGGTTCAAGAAAAGATGGCCTTGCTGGAATGGTTTGCAAACGAGTACAAGAAGTTTGGTTGCACCCTGGAGTTCGTTACCAACAAATCACAGGAAGGATCACAGTTCTGCAGAGGTTTTGGTGGTATTGGAGGAATTCTTCGTTACCAGCTTGACATAAGATCGTTTGATGAACTATCTGATGGGGAAGAGTACGGTGATTCTGAATAG 3924 43.6 MTQPQLPISISRNDSAQLVIEVQENLNKLGKSVLATDENTFNRSIYRIPTFMREVHPKAFEPQLVSFGPYHHGKPQYASMELEKQKAFRRLKTNPEMLESIVQTVTDNLQNLLGAYDKLIEGEWAKRPAKFLEVLIVDGCFMLSFLKKCPPSLSSMSWDIKRDMLLLENQLPMLLLDDLYSILPNMDGRLAWFICKSMCFASGEAVSMGGNLHILDMYRMSLLGTTILENKDGSMERKTKKSGPEYQVIRHATQLRDAGIDFQESGTKSLTDVSFDSKKGVLKIPQLVVDDDSEASLLNVMAFEKLHEEAGSEVTSFVVLMNNLIDVDEDVALLSSKNILANALGDDQSAAELFGSLGKGAAMDLESHITEVHHQVNLHCRRPWNEWCASLKHNYFHNPWAIISLVAAILGFAILIVQAVYQIVSILRAAHDVILILISLFLVVPPEHNRCPPPQIAYQLQLPNCDLQSLSDANDSSLGGLVWSSAKEEGDLLIEHRPQEDSAAATPVVHDADGFDGGFSSLDSMLQWAIGHSDPAKLKDTAQDVKRLSPSEIKKRQEEIKDLIEELKVPSDAKLMQIAIDDLKNSSLSLEDRHRALQELLLLVEPIDNANDLDKLGGLAVLIHELNHFDPDIRKVAAWILGKASQNNPIVQKQVLELGALAKLVTMVKSDFVEEAIKALYAISSLVQNNLSGQELFYAEAGETMLQDILSNSSMDIRLQKKAVFLASDLAVTQLEKTDEAERPFFGDRLFLKSVVDLIHSTDIDLQEKALIALKNLLLLRTTKAQVLREFCGLDVALERMRVKLEVLKEGEDHRDYAMDVEDLRSQVELLFLEKLGKRMQRPVAALSHEHPSRRHLSLSSTHPTVFSFITMADAHETDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVAGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVEILIVWENLDINRYVLKNAATGEIIIKHLNKEQEANQSNFRDTATSAELEVQEKMALLEWFANEYKKFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRSFDELSDGEEYGDSE 1307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1621156 1635489 - CmPI595203_06g001570.1 Cmu06g0157 417817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0157 1307 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 873 1298 IPR004403 GO:0002184(PANTHER)|GO:0003747(InterPro)|GO:0005829(PANTHER)|GO:0006415(InterPro)|GO:0016149(PANTHER)|GO:0018444(PANTHER)|GO:1990825(PANTHER)
Cmu06g0157 1307 Pfam eRF1 domain 1 888 1010 IPR005140 -
Cmu06g0157 1307 SUPERFAMILY ARM repeat 561 792 IPR016024 -
Cmu06g0157 1307 Pfam Plant protein of unknown function 45 412 IPR004158 -
Cmu06g0157 1307 Gene3D - 555 840 IPR011989 -
Cmu06g0157 1307 FunFam Eukaryotic peptide chain release factor subunit 1 1007 1148 - -
Cmu06g0157 1307 FunFam Eukaryotic peptide chain release factor subunit 1 873 1006 - -
Cmu06g0157 1307 FunFam Peptide chain release factor subunit 1 1150 1307 - -
Cmu06g0157 1307 Coils Coil 580 600 - -
Cmu06g0157 1307 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 877 1011 IPR024049 -
Cmu06g0157 1307 Gene3D eRF1 domain 2 1007 1148 IPR042226 -
Cmu06g0157 1307 SMART eRF1_1_2 875 1011 IPR005140 -
Cmu06g0157 1307 NCBIfam peptide chain release factor aRF-1 883 1288 IPR004403 GO:0003747(InterPro)|GO:0006415(InterPro)
Cmu06g0157 1307 SUPERFAMILY Translational machinery components 1013 1147 - -
Cmu06g0157 1307 Pfam eRF1 domain 3 1152 1289 IPR005142 -
Cmu06g0157 1307 Pfam eRF1 domain 2 1015 1148 IPR005141 -
Cmu06g0157 1307 Gene3D eRF1 domain 1 867 1006 IPR024049 -
Cmu06g0157 1307 Gene3D - 1150 1307 IPR029064 -
Cmu06g0157 1307 SUPERFAMILY L30e-like 1149 1291 IPR029064 -
Cmu06g0157 1307 Pfam Nucleotide exchange factor Fes1 522 613 IPR013918 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0724 Cmu-Chr5:6253131 Cmu06g0157 Cmu-Chr6:1621156 6.50E-18 dispersed
Cmu06g0157 Cmu-Chr6:1621156 Cmu08g1266 Cmu-Chr8:25004404 3.80E-35 dispersed
Cmu06g0157 Cmu-Chr6:1621156 Cmu06g0158 Cmu-Chr6:1644080 5.70E-92 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0157 K03265 - csv:101218139 842.802