Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu06g0157 | ATGACGCAGCCACAGCTGCCCATCAGCATTAGTAGAAACGATAGTGCTCAGTTGGTGATTGAGGTGCAGGAAAATCTCAATAAACTGGGGAAATCAGTACTTGCTACGGACGAGAATACCTTCAATCGTTCGATCTACAGAATACCAACATTCATGAGAGAAGTTCATCCGAAAGCGTTCGAGCCACAGTTGGTGTCGTTTGGGCCATACCACCATGGGAAACCACAATATGCTTCAATGGAACTGGAAAAACAGAAAGCGTTTCGCCGTTTGAAAACCAACCCAGAGATGTTAGAGTCGATTGTGCAGACTGTGACTGACAATTTGCAAAACCTGTTGGGAGCATACGATAAGCTAATTGAGGGTGAATGGGCGAAACGTCCTGCCAAGTTCTTGGAGGTGTTGATTGTGGATGGCTGTTTCATGCTAAGTTTCCTCAAGAAATGTCCCCCCTCCCTAAGTTCTATGAGTTGGGATATAAAGCGGGACATGCTTCTGCTTGAGAATCAGCTACCCATGCTGCTTCTTGACGATTTGTATTCCATTTTACCAAACATGGATGGAAGACTGGCATGGTTTATATGCAAGTCAATGTGCTTCGCATCAGGGGAAGCAGTATCAATGGGAGGAAACTTGCACATTTTGGATATGTATAGAATGTCACTATTGGGTACTACGATATTAGAGAATAAGGATGGTAGTATGGAGAGAAAAACGAAGAAATCCGGGCCAGAATATCAAGTGATTCGACATGCAACACAGCTTCGTGACGCGGGGATAGATTTCCAGGAAAGCGGCACAAAGAGCCTTACTGACGTGAGTTTTGACTCCAAAAAAGGGGTGCTGAAAATTCCACAATTAGTGGTGGACGATGATAGTGAAGCCAGTTTATTAAATGTGATGGCATTTGAGAAACTACATGAGGAGGCTGGAAGCGAAGTCACATCTTTCGTAGTATTGATGAACAATTTGATAGACGTGGATGAAGATGTGGCTTTGCTGTCTTCTAAAAATATATTAGCTAACGCGCTTGGGGATGATCAAAGTGCGGCGGAGTTGTTTGGTTCGCTTGGGAAAGGGGCGGCTATGGATTTGGAAAGCCACATTACAGAGGTGCATCACCAGGTGAATCTGCATTGCCGCCGGCCATGGAATGAATGGTGTGCAAGTCTCAAACATAATTACTTTCATAACCCATGGGCCATTATCTCACTCGTTGCCGCTATTCTCGGTTTCGCCATCCTTATTGTTCAAGCCGTCTACCAAATTGTCTCGATATTAAGAGCCGCACACGATGTGATTCTCATTCTCATATCACTGTTTCTTGTTGTCCCTCCCGAGCATAATCGGTGCCCCCCTCCTCAAATTGCTTACCAACTTCAACTTCCCAACTGCGATCTTCAATCTCTCTCAGATGCTAATGACTCTTCTTTGGGGGGTTTAGTCTGGTCTTCTGCAAAAGAAGAGGGCGATCTCCTTATTGAGCACAGGCCCCAGGAAGATTCCGCCGCCGCCACACCTGTCGTTCACGATGCCGATGGCTTTGATGGCGGCTTTTCTTCCCTCGATAGCATGTTACAGTGGGCTATAGGCCATTCTGATCCTGCAAAACTGAAGGATACTGCACAGGATGTGAAACGATTGTCTCCAAGTGAGATAAAGAAGCGTCAAGAAGAAATTAAGGACCTAATAGAGGAGTTGAAGGTGCCATCAGATGCAAAGCTGATGCAAATTGCGATAGATGACTTGAAAAATTCCTCTCTATCATTGGAAGATCGCCATCGGGCATTACAGGAGCTTTTACTACTCGTTGAGCCAATAGACAATGCAAATGATTTGGACAAACTTGGGGGCCTTGCTGTGCTTATTCATGAGCTTAATCATTTCGATCCTGATATTAGGAAAGTTGCAGCGTGGATTCTTGGAAAAGCAAGTCAGAATAACCCTATTGTTCAAAAGCAGGTATTGGAACTCGGGGCACTAGCAAAATTAGTAACGATGGTAAAATCTGATTTTGTAGAAGAAGCCATCAAGGCATTGTATGCTATTTCATCATTGGTTCAAAATAATTTATCTGGCCAGGAATTATTCTATGCCGAAGCTGGAGAAACCATGCTTCAGGATATTTTAAGCAACTCGAGCATGGATATCAGATTGCAAAAGAAAGCTGTTTTTCTTGCAAGTGATTTGGCTGTGACACAACTAGAAAAAACAGATGAAGCTGAAAGGCCATTTTTTGGAGATCGCCTTTTCTTGAAGTCTGTGGTTGATCTCATCCATTCCACAGACATTGATCTCCAGGAGAAGGCCCTCATTGCTCTAAAGAACCTCCTGCTTTTGAGAACAACGAAAGCTCAAGTTTTAAGAGAATTTTGTGGGTTGGATGTTGCTTTGGAGAGGATGAGGGTGAAGCTGGAGGTATTAAAGGAAGGGGAAGATCACCGAGATTATGCAATGGATGTGGAAGATCTACGAAGCCAAGTGGAGTTACTTTTCCTTGAAAAGCTGGGAAAGAGAATGCAGCGGCCGGTAGCAGCTCTCTCTCACGAACATCCATCCCGGCGGCATCTTTCTCTCTCGAGCACCCATCCCACCGTATTTTCATTTATTACGATGGCTGATGCTCATGAAACTGATAAGAACATTGAAATATGGAAAATTAAGAAGTTGATTAAAGCACTTGAAGCTGCAAGAGGTAATGGGACTAGCATGATCTCTCTCATCATGCCTCCGCGTGATCAAATATCTCGTGTTACTAAGATGCTTGGTGATGAATTTGGAACTGCTTCGAACATTAAGAGCAGGGTAAATCGTCAATCTGTTTTGGGTGCTATCACGTCTGCTCAGCAGAGACTCAAGCTGTATAACAAGGTTCCTCCAAATGGGCTTGTGCTTTATACTGGGACAATCGTGACTGAAGATGGAAAAGAAAAGAAAGTCACAATTGATTTTGAGCCTTTCAGGCCTATAAATGCATCTCTTTATCTCTGCGACAACAAGTTCCACACGGAAGCCCTGAATGAACTGTTAGAATCTGATGACAAGTTTGGCTTCATTGTCATGGATGGTAATGGAACACTCTTTGGCACATTGAGTGGTAACACACGTGAAGTCCTTCACAAATTTAGTGTCGACCTTCCTAAGAAACATGGAAGAGGAGGTCAGTCAGCACTTAGGTTTGCCCGTCTTCGGATGGAGAAGCGGCACAACTATGTGAGGAAAACAGCAGAGCTTGCAACCCAGTTCTTTATTAATCCTGCCACTAGTCAACCCAATGTTGCAGGATTGATACTGGCTGGATCAGCTGACTTCAAAACAGAGCTCAGTCAATCCGACATGTTTGATCCTCGTCTTCAGGCCAAAATACTTAATGTTGTCGATGTCTCTTATGGAGGGGAAAATGGATTCAATCAAGCTATTGAATTGTCATCCGAGATCTTGTCTAATGTAAAATTTATACAGGAGAAGCGCTTGATTGGAAAATACTTTGAAGAGATTAGCCAGGACACAGGGAAGTATGTTTTTGGTGTTGACGACACACTGAAAGCTCTGGAGATGGGTGCTGTTGAAATACTTATTGTTTGGGAAAATTTAGATATCAATAGGTATGTATTAAAGAATGCTGCCACTGGTGAGATTATTATAAAGCATTTGAACAAGGAACAGGAAGCCAATCAGAGCAACTTTCGTGACACCGCCACCTCTGCTGAGTTGGAGGTTCAAGAAAAGATGGCCTTGCTGGAATGGTTTGCAAACGAGTACAAGAAGTTTGGTTGCACCCTGGAGTTCGTTACCAACAAATCACAGGAAGGATCACAGTTCTGCAGAGGTTTTGGTGGTATTGGAGGAATTCTTCGTTACCAGCTTGACATAAGATCGTTTGATGAACTATCTGATGGGGAAGAGTACGGTGATTCTGAATAG | 3924 | 43.6 | MTQPQLPISISRNDSAQLVIEVQENLNKLGKSVLATDENTFNRSIYRIPTFMREVHPKAFEPQLVSFGPYHHGKPQYASMELEKQKAFRRLKTNPEMLESIVQTVTDNLQNLLGAYDKLIEGEWAKRPAKFLEVLIVDGCFMLSFLKKCPPSLSSMSWDIKRDMLLLENQLPMLLLDDLYSILPNMDGRLAWFICKSMCFASGEAVSMGGNLHILDMYRMSLLGTTILENKDGSMERKTKKSGPEYQVIRHATQLRDAGIDFQESGTKSLTDVSFDSKKGVLKIPQLVVDDDSEASLLNVMAFEKLHEEAGSEVTSFVVLMNNLIDVDEDVALLSSKNILANALGDDQSAAELFGSLGKGAAMDLESHITEVHHQVNLHCRRPWNEWCASLKHNYFHNPWAIISLVAAILGFAILIVQAVYQIVSILRAAHDVILILISLFLVVPPEHNRCPPPQIAYQLQLPNCDLQSLSDANDSSLGGLVWSSAKEEGDLLIEHRPQEDSAAATPVVHDADGFDGGFSSLDSMLQWAIGHSDPAKLKDTAQDVKRLSPSEIKKRQEEIKDLIEELKVPSDAKLMQIAIDDLKNSSLSLEDRHRALQELLLLVEPIDNANDLDKLGGLAVLIHELNHFDPDIRKVAAWILGKASQNNPIVQKQVLELGALAKLVTMVKSDFVEEAIKALYAISSLVQNNLSGQELFYAEAGETMLQDILSNSSMDIRLQKKAVFLASDLAVTQLEKTDEAERPFFGDRLFLKSVVDLIHSTDIDLQEKALIALKNLLLLRTTKAQVLREFCGLDVALERMRVKLEVLKEGEDHRDYAMDVEDLRSQVELLFLEKLGKRMQRPVAALSHEHPSRRHLSLSSTHPTVFSFITMADAHETDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVAGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVEILIVWENLDINRYVLKNAATGEIIIKHLNKEQEANQSNFRDTATSAELEVQEKMALLEWFANEYKKFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRSFDELSDGEEYGDSE | 1307 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 1621156 | 1635489 | - | CmPI595203_06g001570.1 | Cmu06g0157 | 417817 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu06g0157 | 1307 | PANTHER | PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 | 873 | 1298 | IPR004403 | GO:0002184(PANTHER)|GO:0003747(InterPro)|GO:0005829(PANTHER)|GO:0006415(InterPro)|GO:0016149(PANTHER)|GO:0018444(PANTHER)|GO:1990825(PANTHER) | |
Cmu06g0157 | 1307 | Pfam | eRF1 domain 1 | 888 | 1010 | IPR005140 | - | |
Cmu06g0157 | 1307 | SUPERFAMILY | ARM repeat | 561 | 792 | IPR016024 | - | |
Cmu06g0157 | 1307 | Pfam | Plant protein of unknown function | 45 | 412 | IPR004158 | - | |
Cmu06g0157 | 1307 | Gene3D | - | 555 | 840 | IPR011989 | - | |
Cmu06g0157 | 1307 | FunFam | Eukaryotic peptide chain release factor subunit 1 | 1007 | 1148 | - | - | |
Cmu06g0157 | 1307 | FunFam | Eukaryotic peptide chain release factor subunit 1 | 873 | 1006 | - | - | |
Cmu06g0157 | 1307 | FunFam | Peptide chain release factor subunit 1 | 1150 | 1307 | - | - | |
Cmu06g0157 | 1307 | Coils | Coil | 580 | 600 | - | - | |
Cmu06g0157 | 1307 | SUPERFAMILY | N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 | 877 | 1011 | IPR024049 | - | |
Cmu06g0157 | 1307 | Gene3D | eRF1 domain 2 | 1007 | 1148 | IPR042226 | - | |
Cmu06g0157 | 1307 | SMART | eRF1_1_2 | 875 | 1011 | IPR005140 | - | |
Cmu06g0157 | 1307 | NCBIfam | peptide chain release factor aRF-1 | 883 | 1288 | IPR004403 | GO:0003747(InterPro)|GO:0006415(InterPro) | |
Cmu06g0157 | 1307 | SUPERFAMILY | Translational machinery components | 1013 | 1147 | - | - | |
Cmu06g0157 | 1307 | Pfam | eRF1 domain 3 | 1152 | 1289 | IPR005142 | - | |
Cmu06g0157 | 1307 | Pfam | eRF1 domain 2 | 1015 | 1148 | IPR005141 | - | |
Cmu06g0157 | 1307 | Gene3D | eRF1 domain 1 | 867 | 1006 | IPR024049 | - | |
Cmu06g0157 | 1307 | Gene3D | - | 1150 | 1307 | IPR029064 | - | |
Cmu06g0157 | 1307 | SUPERFAMILY | L30e-like | 1149 | 1291 | IPR029064 | - | |
Cmu06g0157 | 1307 | Pfam | Nucleotide exchange factor Fes1 | 522 | 613 | IPR013918 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu05g0724 | Cmu-Chr5:6253131 | Cmu06g0157 | Cmu-Chr6:1621156 | 6.50E-18 | dispersed | |
Cmu06g0157 | Cmu-Chr6:1621156 | Cmu08g1266 | Cmu-Chr8:25004404 | 3.80E-35 | dispersed | |
Cmu06g0157 | Cmu-Chr6:1621156 | Cmu06g0158 | Cmu-Chr6:1644080 | 5.70E-92 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu06g0157 | K03265 | - | csv:101218139 | 842.802 |