Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cmu06g0204	ATGTATTGGAAACTCAGAGGCATTGGTAATATGGATGAAAGGTCTACGGATGACATGAAAGGAACTAGAGTTGCTTTGATGGAGTCATCGTCTTCGAGATTAATGAAGAGGTCACGTGCCCCTGGAAGCGTAGCCCAAGTCCCTTCGTGTATGGTTGATGGCTGCAGTTCAGACCTTAGCAAATGCAGGGACTATCATCGTCGCCATAAAGTATGCGAGCTCCATTCTAAAACACCGAAAGTAACCATTTGCGGTCAGGAACAACGATTCTGCCAGCAGTGTAGCAGATTCCATTCTTTGGTGGAGTTTGATGATCGAAAACGAAGCTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCAGCGACTATGACACTAAATGCAGGAAGATTTCTCTATGGGAACCAAGGTCCAAGATTCTTGCCATTCGGCAATCAATTACTGTCTGCCAGCAATGATGTGAGCTCTTCTTGGATTGGAATGATCAAACCCGAGAACAACACGCCTCTTTGCAGTGGCAACTCACAGTTCGACTTTACCGACAGAAGAAAAAGTATGTTGCCCGGGTCGTTGGCTTTTGATTACAAAGAAAAACAACTTGCAATCTCTTGCATTCCCATAGGACTGTTTCCCAAATCATCTGATACTCAGCCATTTCTCAACGTTGGATCCAGCAACGTTGGGAATGTTCAGAAAGTGCTCGGAAACGGATCAAATCGGTTCTTCAACTCTGACTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGCCTGGGGAGATTAATCTAAGCTCCATGAGCCAATCCAACCTCATCCCCCCAGCCAATTTCATCCACAGCGACGGTCTTGGCTTGGAGAGTGACCCCATTAATTCTGGTTTGGTCTCGGACGGTAGCAGCGATGCCAATATCCGGTGCTACTCAACGTTCCAGGACGGACCTGATGGATCATCTGTTGATTTATTCAGGTTTTGA	987	46.61	MYWKLRGIGNMDERSTDDMKGTRVALMESSSSRLMKRSRAPGSVAQVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYGNQGPRFLPFGNQLLSASNDVSSSWIGMIKPENNTPLCSGNSQFDFTDRRKSMLPGSLAFDYKEKQLAISCIPIGLFPKSSDTQPFLNVGSSNVGNVQKVLGNGSNRFFNSDCALSLLSTPVEPGEINLSSMSQSNLIPPANFIHSDGLGLESDPINSGLVSDGSSDANIRCYSTFQDGPDGSSVDLFRF	328

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
6	2159256	2161158	+	CmPI595203_06g002040.1	Cmu06g0204	417864

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cmu06g0204	328	FunFam	Squamosa promoter-binding-like protein 14	42	111	-	-
	Cmu06g0204	328	Gene3D	-	42	111	IPR036893	GO:0003677(InterPro)\|GO:0005634(InterPro)
	Cmu06g0204	328	Pfam	SBP domain	50	123	IPR004333	GO:0003677(InterPro)
	Cmu06g0204	328	PANTHER	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	27	297	IPR044817	GO:0003677(InterPro)
	Cmu06g0204	328	ProSiteProfiles	Zinc finger SBP-type profile.	47	124	IPR004333	GO:0003677(InterPro)
	Cmu06g0204	328	SUPERFAMILY	SBT domain	48	129	IPR036893	GO:0003677(InterPro)\|GO:0005634(InterPro)

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Cmu04g1199	Cmu-Chr4:26554220	Cmu06g0204	Cmu-Chr6:2159256	9.50E-33	dispersed
	Cmu05g1426	Cmu-Chr5:18694878	Cmu06g0204	Cmu-Chr6:2159256	9.10E-37	dispersed
	Cmu06g0204	Cmu-Chr6:2159256	Cmu06g1840	Cmu-Chr6:29299372	6.30E-40	dispersed
	Cmu11g1897	Cmu-Chr11:30975879	Cmu06g0204	Cmu-Chr6:2159256	7.70E-30	transposed
	Cmu03g0988	Cmu-Chr3:4450022	Cmu06g0204	Cmu-Chr6:2159256	1.60E-42	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	6328	PF03110	SBP	7.40E-29	No_clan	Cmu	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cmu06g0204	-		-	-	0.0