Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0214 ATGAGTTCATTCTTTGTTGGGTTTTCTTCTTCTTCTTCTTCTTCAGCTGCAACTTCCACTGCTATCTTTAATCCTTTCAGTACCTTTTTGCTGTATAGATCTCTGAAGATTTCTTCCATGAACTGGTTCATTAATGGTGGAGTTATGGAAACTAAGGCTGGTTTGCTTGGTGGGGGTGGAAAGCTATGGCTTCAATTGTGGGAAACTGTCATTGGAAATTGTTGCAAGATGCATCACCAGTATTACCAGTATATTGGATCCAAGAAAGTTGGAAAAACATGGTGGAGAAGGCTTTTGGTGGCTTGGGTTTTTAGCTCTACTCTTGCTTCTTTATGGATCTTCCATTACATGAGCTCCCAAGCTACAGAGAAGAGGAAAGAAGCCTTGGGAAGCATGTGTGATGAAAGGGCTAGAATGCTTCAAGATCAGTTTAATGTCAGTATGAATCATATTCAAGCAATGTCCATCCTCATCTCCACCTTCCATCATGGCAAAAACCCATCTGCTATAGATCAGAGGACGTTTGCGAGGTACACGGAAAGAACTGCTTTTGAGAGGCCTCTTACCAGTGGTGTGGCATATGCAGTAAGGGTGCTCCATTCTGAAAGAGAACATTTTGAGAAGCAACAGGGCTGGACAATTAAAAGGATGGACAAAATCGAACAAAGTCCAGTTCACGAAGATGACTATGCTCCAGAAGATCTGGAGCCATCACCCACCCAAGACGAATATGCTCCTGTAATCTTCGCACAGGATACAATTTCTCATGTCGTTTCTCTCGATATGCTGTCGGGAGTGGAAGACCGTAAGAATGTATTACGCGCTAGATCATCAGGAAAGGGAGTCTTAACTGCTCCATTCAGGTTAATCAAAACAAATCGTCTAGGGGTCATACTTACATTTGCGGTCTACAAAAGAGATCTTCCCTCAAATGCCACTCCAAATGAGAGGATTCAAGCAACAGATGGGTATCTTGGCGGAGTTTTTGATATCGAGTCTCTGGTGGAGAAGTTACTTCAACAGCTTGCAAGCAACCAAACCATCCTAGTGAATGTTTATGATACCACTAACCAATCACATCCAATCAGTATGTATGGTAAAGATGTATCAGTTGATGGGTTGCAGCATGTTAGCCCCCTTAACTTTGGGGATCCGGATAGGAAGCATGAGATGCGATGCAGATTCAAGCAAAAACAACCTTGGCCATGGCTGGCAATGACTACTTCAATTGGCATACTCATTATTGCATTGCTTGTGGGGTATATATTCCATGCAACGTTGAACCGAATTGCCAAAGTGGAGGATGATTATCATGAGATGATGGTACTCAAGAAACGGGCAGAAGATGCTGATATTGCCAAATCCCAGTTCCTTGCAACTGTTTCCCATGAGATCAGAACCCCAATGAATGGTGTTCTAGGAATGTTGCATTTGCTTATGGACACTGACTTAGATGTGACTCAACAAGATTACGTTAAAACTGCACAAGACAGTGGAAAAGCTTTGGTATCATTGATAAACGAGGTTTTGGATCAGGCAAAAATTGAATCTGGAAAGCTTGAGCTTGAAGCTATACCTTTCAATCTGCGAGCAATTTTGGATGATATTTTATCACTCTTCTCTGGGAAATCTCAAGAAAAAGGACTGGAGCTGGCAGTTTACATTTCAGATAGTGTTCCCGAGACGCTTATTGGTGATCCTGGAAGGTTTAGGCAAATCATCACTAATCTTGTGGGAAACTCAATCAAGTTCACAGAGAAAGGGCACATATTTGTCACTGTTAATCTCGTCAAGGAGGTTATTGAATCAATTGATCTAGAGATCGAGTCATCAACAAATAGCACCTTGAGTGGCTATCCTATTGCGAATAGACGTCTCAGCTGGGCAGGATTTCGAACATTCAGTCAAGAGGGACCCACTGCTTGTCATTTCATGCCATCTCCACCAGACCTTATTAACCTCATGGTATCCGTGGAAGATACAGGTGTTGGTATTCCTCTAGAAGCCCAATCACGCATTTTCACTCCCTTCATGCAGGTTCGACCATCCATCTCTAGAACTCATGGGGGAACAGGTATTGGGCTGAGTATTAGCAAATGTTTGGTTGGCCTCATGAAGGGGGAGATTGGTTTTGTGAGTGTACCTAAGATTGGCTCTACCTTCACATTCACTGCAGTTTTCACAAACGGATCTTCCAATTTGAGTGAGTATAACAAAACCCAACAAATTAAGAACACTTCCATCACTGCAACCTCAGAATTTAAGGGTATGAGAGCATTAGTTGTGGACCATCAACCTATTCGAGCCAAAGTATCAAGATATCATATCCAACGACTTGGAATAAATGTCGAAGTCTTATCTGACTTGAATCAATGTCTGTCTACCACGACTATTAGTGGTTCAACTATCAATATGATTTTTGTTGAGCAGAAACTTTGGGATCAGGATACGAGCACATCAGATCATTTTATCAAAAACTTGAGAAATTCTTATGCGGTTCCTCCCAAACTATTTCTTCTTACTAGCTCCATTAGTTCTTCAAAAACTAGCACTATAATTTCTGATGCATTCACTCCCACTGTCATCTTAAAGCCCTTGAGGGCAGGCATGCTCGCTGCCTCTCTACACCGAGTCATGGGTGTGGGGATCAAGGTTAATCCTCGCAATGGAGAGCTTCCTGTTCTCTCACTCCGTAGTTTACTTCTTGGTCGAAAAATTCTGGTAATAGATGACAATAAGGTGAATCGTATAGTCGCTGCTGGTGCTCTACAGCGGTATGGAGCTGATGTAGTATGTGAAAACAGTGGACGAGATGCAATCCGACTGCTTACGCCACCCCATCATTTTGATGCATGTTTCATGGATATTCAGATGCCAGAAATGGATGGCTTTGAAGCTACAAGAAGAATTCGGGAAATCGAACATCAAATCAATGATGGTATCCAAATTGGAGAACTATCAAAAGAAGCATACGAGAATACATGTTATTGGCGCGTTCCCATCTTGGCCATGACTGCAGACGTAATCCAGGCCACGCATGAGGAATGCCTTCGGTGTGGGATGGATGGTCAGGCATGTACAGCATGCTTAAAAGGGTGTAAATTACCTCCGATCGAAGGTGATCGAGTTCTTGGATTGCTTCATATTATACCAGGCAAGCCTAAATTTTGTGGAAGAGTGTAA 3183 42.48 MSSFFVGFSSSSSSSAATSTAIFNPFSTFLLYRSLKISSMNWFINGGVMETKAGLLGGGGKLWLQLWETVIGNCCKMHHQYYQYIGSKKVGKTWWRRLLVAWVFSSTLASLWIFHYMSSQATEKRKEALGSMCDERARMLQDQFNVSMNHIQAMSILISTFHHGKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREHFEKQQGWTIKRMDKIEQSPVHEDDYAPEDLEPSPTQDEYAPVIFAQDTISHVVSLDMLSGVEDRKNVLRARSSGKGVLTAPFRLIKTNRLGVILTFAVYKRDLPSNATPNERIQATDGYLGGVFDIESLVEKLLQQLASNQTILVNVYDTTNQSHPISMYGKDVSVDGLQHVSPLNFGDPDRKHEMRCRFKQKQPWPWLAMTTSIGILIIALLVGYIFHATLNRIAKVEDDYHEMMVLKKRAEDADIAKSQFLATVSHEIRTPMNGVLGMLHLLMDTDLDVTQQDYVKTAQDSGKALVSLINEVLDQAKIESGKLELEAIPFNLRAILDDILSLFSGKSQEKGLELAVYISDSVPETLIGDPGRFRQIITNLVGNSIKFTEKGHIFVTVNLVKEVIESIDLEIESSTNSTLSGYPIANRRLSWAGFRTFSQEGPTACHFMPSPPDLINLMVSVEDTGVGIPLEAQSRIFTPFMQVRPSISRTHGGTGIGLSISKCLVGLMKGEIGFVSVPKIGSTFTFTAVFTNGSSNLSEYNKTQQIKNTSITATSEFKGMRALVVDHQPIRAKVSRYHIQRLGINVEVLSDLNQCLSTTTISGSTINMIFVEQKLWDQDTSTSDHFIKNLRNSYAVPPKLFLLTSSISSSKTSTIISDAFTPTVILKPLRAGMLAASLHRVMGVGIKVNPRNGELPVLSLRSLLLGRKILVIDDNKVNRIVAAGALQRYGADVVCENSGRDAIRLLTPPHHFDACFMDIQMPEMDGFEATRRIREIEHQINDGIQIGELSKEAYENTCYWRVPILAMTADVIQATHEECLRCGMDGQACTACLKGCKLPPIEGDRVLGLLHIIPGKPKFCGRV 1060
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2322448 2328866 - CmPI595203_06g002140.1 Cmu06g0214 417874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0214 1060 SMART REC_2 904 1030 IPR001789 GO:0000160(InterPro)
Cmu06g0214 1060 FunFam Histidine kinase 4 425 516 - -
Cmu06g0214 1060 PANTHER TWO-COMPONENT HISTIDINE KINASE 92 1023 IPR050956 -
Cmu06g0214 1060 SMART HKATPase_4 565 729 IPR003594 -
Cmu06g0214 1060 CDD HisKA 453 514 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cmu06g0214 1060 Pfam CHASE domain 169 365 IPR006189 -
Cmu06g0214 1060 SMART HisKA_10 453 518 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cmu06g0214 1060 ProSiteProfiles CHASE domain profile. 166 392 IPR006189 -
Cmu06g0214 1060 Gene3D CHASE domain 170 399 IPR042240 -
Cmu06g0214 1060 PRINTS Bacterial sensor protein C-terminal signature 654 668 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cmu06g0214 1060 PRINTS Bacterial sensor protein C-terminal signature 672 682 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cmu06g0214 1060 PRINTS Bacterial sensor protein C-terminal signature 689 707 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cmu06g0214 1060 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 439 519 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Cmu06g0214 1060 Gene3D - 897 1026 - -
Cmu06g0214 1060 Pfam Response regulator receiver domain 906 977 IPR001789 GO:0000160(InterPro)
Cmu06g0214 1060 CDD HATPase_EvgS-ArcB-TorS-like 570 727 - -
Cmu06g0214 1060 ProSiteProfiles Response regulatory domain profile. 758 879 IPR001789 GO:0000160(InterPro)
Cmu06g0214 1060 CDD REC_hyHK_CKI1_RcsC-like 906 1023 - -
Cmu06g0214 1060 SUPERFAMILY CheY-like 753 880 IPR011006 -
Cmu06g0214 1060 Gene3D - 422 516 - -
Cmu06g0214 1060 SUPERFAMILY CheY-like 903 1023 IPR011006 -
Cmu06g0214 1060 ProSiteProfiles Response regulatory domain profile. 905 1046 IPR001789 GO:0000160(InterPro)
Cmu06g0214 1060 FunFam Histidine kinase 4 170 399 - -
Cmu06g0214 1060 ProSiteProfiles Histidine kinase domain profile. 460 729 IPR005467 -
Cmu06g0214 1060 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 507 724 IPR036890 -
Cmu06g0214 1060 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 653 725 IPR003594 -
Cmu06g0214 1060 Gene3D - 517 730 IPR036890 -
Cmu06g0214 1060 SMART CHASE_2 166 367 IPR006189 -
Cmu06g0214 1060 Pfam His Kinase A (phospho-acceptor) domain 453 518 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cmu06g0214 1060 Gene3D - 117 169 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0939 Cmu-Chr2:13227809 Cmu06g0214 Cmu-Chr6:2322448 9.10E-297 dispersed
Cmu06g0214 Cmu-Chr6:2322448 Cmu11g0104 Cmu-Chr11:1581728 8.00E-278 dispersed
Cmu06g0214 Cmu-Chr6:2322448 Cmu02g0274 Cmu-Chr2:2511496 3.50E-305 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6332 PF03924 CHASE 2.60E-37 CL0165 Cmu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0214 K14489 - csv:101216313 1848.56