Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0229 ATGGATCAATTTCTTACCAAAACAAAAGAAGATCAAGAAGATCAAGAAGAAGAAGATGAAGAAGAAGAAGAAGAAGATCAAGATCAAGTTGTTGCATGCAATTTCTTCCCAAATTCTCACTCCCAATTAACTCAACAACAAGATCGAGATCAAGAAAGTGGAAATTATGAGTCTCAAAATGAAGATCAACCGATACTCATGGATTTATCCTTAAGAATGGAAAGCAATGGCTTTGATGGTGTTGTAGAAAGAGAACACATGTTTGATAAAGTTGTTACTCCAAGTGATGTTGGCAAATTAAACCGTTTAGTCATCCCAAAACAACATGCTGAAAAATACTTCCCTTTAGACTCATCCACCAACGACAAAGGCCTCATCTTGAACTTTGAAGACCGTCATGGCAAGCCTTGGCGCTTTCGTTACTCTTATTGGAATAGTAGCCAAAGCTATGTCATGACTAAAGGTTGGAGCCGTTTTGTTAAGGAGAAAAAACTCGACGCCGGCGACATCGTTTCCTTCCACCGTGCTCTACCGAGTCATTCCGCCAACGACAACCGTCTTTTTATCGACTGGCGTCGTCGTCGCCCTGACGCTCCTACTCCTCATCACAATCATCACCACCATTTCTCCAACCCTTTTCTCTTTCGTTGGGCTACTGCTCGTCACTTGCCACCACCACTGCCTCCTATGCGACGAACAACTCAACACCACCATCTTTACCCTAATTACGGGTTTGAAGTCCCTAACTTTGGGATGTCTAATAACAATAATTCTTCCATGTATTATTTTCGACCTATGTCGCCTTCTTCTTCTTCTTCGTCTCTTTATAGGATGGGAAATGGGGATGAGATTGTTGTTAATAATCAAGAATGTTCTTCTATGGGGATTATTAACAAACCCGGCTCCGGCGCTGCGAAACGGTTGAGACTCTTTGGAGTGAATATGGAGTGTGCTTCACCGGACGGAGAAGGAGGAGGAGGAGAGGATTTGTCGAACAGTGGCGATTCGAGAAGAGGGAAAGAACCCTTGTCATTGAATTGGGATTTACTTTAA 1053 42.64 MDQFLTKTKEDQEDQEEEDEEEEEEDQDQVVACNFFPNSHSQLTQQQDRDQESGNYESQNEDQPILMDLSLRMESNGFDGVVEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSTNDKGLILNFEDRHGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRALPSHSANDNRLFIDWRRRRPDAPTPHHNHHHHFSNPFLFRWATARHLPPPLPPMRRTTQHHHLYPNYGFEVPNFGMSNNNNSSMYYFRPMSPSSSSSSLYRMGNGDEIVVNNQECSSMGIINKPGSGAAKRLRLFGVNMECASPDGEGGGGEDLSNSGDSRRGKEPLSLNWDLL 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2517799 2518851 + CmPI595203_06g002290.1 Cmu06g0229 417889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0229 350 Pfam B3 DNA binding domain 88 194 IPR003340 GO:0003677(InterPro)
Cmu06g0229 350 MobiDBLite consensus disorder prediction 1 63 - -
Cmu06g0229 350 MobiDBLite consensus disorder prediction 12 29 - -
Cmu06g0229 350 ProSiteProfiles B3 DNA-binding domain profile. 88 195 IPR003340 GO:0003677(InterPro)
Cmu06g0229 350 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 12 315 IPR044800 GO:0003700(InterPro)
Cmu06g0229 350 Coils Coil 5 29 - -
Cmu06g0229 350 CDD B3_DNA 86 175 IPR003340 GO:0003677(InterPro)
Cmu06g0229 350 SMART B3_2 88 195 IPR003340 GO:0003677(InterPro)
Cmu06g0229 350 MobiDBLite consensus disorder prediction 318 350 - -
Cmu06g0229 350 SUPERFAMILY DNA-binding pseudobarrel domain 85 176 IPR015300 -
Cmu06g0229 350 MobiDBLite consensus disorder prediction 32 63 - -
Cmu06g0229 350 Gene3D - 81 209 IPR015300 -
Cmu06g0229 350 FunFam B3 domain-containing protein 81 206 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2358 Cmu-Chr5:32784659 Cmu06g0229 Cmu-Chr6:2517799 5.10E-40 dispersed
Cmu06g0229 Cmu-Chr6:2517799 Cmu07g0816 Cmu-Chr7:20749924 1.70E-51 dispersed
Cmu06g0229 Cmu-Chr6:2517799 Cmu01g0125 Cmu-Chr1:1137977 9.10E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6334 PF02362 B3 2.30E-28 CL0405 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0229 K09287 - csv:101221141 525.783