Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0268 ATGGGGAAGAAAGGAGGTAGCTCATGGTTGACTGCCGTCAAAAGGGCTTTCAGATCTCCCACTAAAGATGATGATGAAAAGAGAAGAGAGAAACGCCGCTGGATTTTCAGAAAACCAACAAATCAGCCGCCGGAGCCACTCGCCGCCCACCAACCGCCGTCTAAGCCCCCGGCTCTCTCCACTCATTCTGTAGCTTTAGAAGACCAGAAACATGCCCTTGCAGTGGCTGAAGCTGCCATGGTCGCCGCCAGAGCGGCTGCACAAGCCGTCCACCTCACCCGCCCTGCCCGTCCTGGATTGGATCGCCATCGCCTCGCCGCCATTGTGATTCAAACTGCCTTTAGAGGATATCTGGCAAGGAGGGCTCTACGGGCATTGAAGGGGTTGGTGAAGTTGCAGGCATTAGTGAGAGGACACAATGTGAGGAAGCAAGCAAAGACGACGCTGCAGTGTATGAAAGCATTAGTAAGAGTGCAGGAAAAAGTTCTCGATCACCGGATGCGACTTTCCCTCGAGGGTAGCCGACGGTCTACATTCAGCGACACCAACAGCGTGTATGAATCTCGCTATGCTCAAGACGTCTCCGAGAGGAAGACTATTAAGTGTGTATCAAGAGAAGGAAGCAGCATTACGGAGGATTGGGATGAACGTGCTCACACAGTTGAAGAAGTAAAAGCAATGTTACAATATAGAAGAGATGCTGCTTTGAATCGTGACAACATTTTATCTCATTCCTTTTCTCAACAGATATGGAGGACTGGAAAGAGCCCATCAATAGGAAATCAAGCGGAGCTTGAAGAAGGACAAAAATGGCTCGACCAATGGATGGCGAAGAAGCCATGGGAGAATAGAGCAAGAGCTTCCACAGATAACAGACCACAGCCCCTTAAAACGCTCGAAATCGACACCTCTAGGCCCTACTCCTACTTATCTCCCAACAATCTCCACACAACGAATTATCAAACGCAATCACAAAGATCGAACTCGCTTTCCTCATCCTCCCCACTCCACAGAGCCCATCACCATCAGTTCTCCATCACCCCTTCCCCATCAAAATCTCGACCAGTCCAGCAAGTTCGGTCGGCGAGTCCCCGCTACAGCAGAGAAGATAGAAACCAAATCAGCCACCACATTACATCCCAAACACCAAGCTTGAGGACAAAACATCAACATCACAAATGGGGTAGTGGTGGTGGGACTTCAATGCCAAATTACATGGCAGCAACAGAGTCAGCCAAGGCACGAGTCCGGTCGCAAAGTGCGCCGAGGCAAAGGCCAGCAACACCCGAGAGGGAACGAGTTGGAACTGCGAGGAAGCGGCTATCTTTTCCAGTACCGCCGGATCCTTACGGTAGAATAGCAGGGTGCGGTGTTTATGGGAATAGCATGAAGAGCCCAAGTTTTAAGAGTGCTTGTGGAAGGTATGGTGGGTTGGAGGAACAGTCTAACTATTCTTCTTGCTATACAGAAAGCCATGGAGGAGAGGTTTCACCATCTTCAACCACTGACCTCAGAAGGTGGCTGAGATGA 1530 50.33 MGKKGGSSWLTAVKRAFRSPTKDDDEKRREKRRWIFRKPTNQPPEPLAAHQPPSKPPALSTHSVALEDQKHALAVAEAAMVAARAAAQAVHLTRPARPGLDRHRLAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKTTLQCMKALVRVQEKVLDHRMRLSLEGSRRSTFSDTNSVYESRYAQDVSERKTIKCVSREGSSITEDWDERAHTVEEVKAMLQYRRDAALNRDNILSHSFSQQIWRTGKSPSIGNQAELEEGQKWLDQWMAKKPWENRARASTDNRPQPLKTLEIDTSRPYSYLSPNNLHTTNYQTQSQRSNSLSSSSPLHRAHHHQFSITPSPSKSRPVQQVRSASPRYSREDRNQISHHITSQTPSLRTKHQHHKWGSGGGTSMPNYMAATESAKARVRSQSAPRQRPATPERERVGTARKRLSFPVPPDPYGRIAGCGVYGNSMKSPSFKSACGRYGGLEEQSNYSSCYTESHGGEVSPSSTTDLRRWLR 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3055150 3057457 + CmPI595203_06g002680.1 Cmu06g0268 417928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0268 509 MobiDBLite consensus disorder prediction 283 446 - -
Cmu06g0268 509 SMART iq_5 102 124 IPR000048 GO:0005515(InterPro)
Cmu06g0268 509 SMART iq_5 125 146 IPR000048 GO:0005515(InterPro)
Cmu06g0268 509 MobiDBLite consensus disorder prediction 484 509 - -
Cmu06g0268 509 ProSiteProfiles IQ motif profile. 103 131 - -
Cmu06g0268 509 FunFam IQ-domain 11 102 153 - -
Cmu06g0268 509 Pfam IQ calmodulin-binding motif 130 146 IPR000048 GO:0005515(InterPro)
Cmu06g0268 509 Pfam IQ calmodulin-binding motif 106 124 IPR000048 GO:0005515(InterPro)
Cmu06g0268 509 PANTHER IQ-DOMAIN 5-RELATED 9 438 - -
Cmu06g0268 509 Gene3D - 100 157 - -
Cmu06g0268 509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 148 IPR027417 -
Cmu06g0268 509 Pfam Protein of unknown function (DUF4005) 363 469 IPR025064 -
Cmu06g0268 509 ProSiteProfiles IQ motif profile. 127 154 - -
Cmu06g0268 509 MobiDBLite consensus disorder prediction 304 363 - -
Cmu06g0268 509 MobiDBLite consensus disorder prediction 402 425 - -
Cmu06g0268 509 MobiDBLite consensus disorder prediction 17 38 - -
Cmu06g0268 509 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0018 Cmu-Chr5:251208 Cmu06g0268 Cmu-Chr6:3055150 1.30E-114 dispersed
Cmu05g0890 Cmu-Chr5:8108070 Cmu06g0268 Cmu-Chr6:3055150 4.40E-18 dispersed
Cmu06g0268 Cmu-Chr6:3055150 Cmu09g0071 Cmu-Chr9:913359 5.20E-17 dispersed
Cmu06g0268 Cmu-Chr6:3055150 Cmu09g1952 Cmu-Chr9:35600847 6.00E-29 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0268 - - - 0.0