Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0344 ATGGCTTCTTTTCATAGAAAGCAAGCTAACCATGCTTGCTTTCTCCTCCTTTTCCTTTTCTTTTCTCTGCCATCTCTCTCCTTCTCCATCTCGAAAGATGAAGCTTCGTATCTCACTCATCGTCAACTTTTGGCTCTAAAAGAACACGATCAACTCCCAGATGATTACAAATACCAACTTGACATTCCTGACACTTTTCCAAATGAAAGGTTGAAGAAGGCTTATGTAGCCCTTCAAGCTTGGAAACTGGCCATTTATTCTGACCCTCAAAACATGACAGCCAATTGGGTTGGCGCCGATGTATGTTCTTACACCGGCATCTACTGTACTACGGCGCTTGACGACTCAGACATGGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGTATTTGCCGCCGGAAATTGGCCTTATCACCGATTTGGCGCTCTTCCATATTAATTCTAATAGGTTTTGTGGGATCATTCCTTCCAGCTTTTCCAAGCTTGTTCTCATGTTCGAGTTCGATGTCAGCAACAATCGCTTCGTCGGCCATTTTCCTCACGTCGTCCTTGAATGGCCCACCGCTAAGTTCCTCGATCTTCGGTATAATGACTTCGAAGGAGAAGTCCCCTCCACACTCTTCACCAAGGAGTTCGATGCCATTTTCTTAAACAACAACAGATTCACCTCTCTAATTCCAGACACCATCGGAAACTCAACTGTCTCTGTTGTCTCCTTTGCCAACAATGAGTTCCATGGTTGCATACCCAGCACTATTGGCCAAATGTCCAACCTCAACCAAATTCTCTTCATCGGCAACAAGCTCGACGGCTGTTTCCCACCCGAGATAGGAAACCTCGTCAATCTTACGGTCTTCGATGCCAGTGCCAATGGCTTCATTGGGCATCTGCCCGAAACCTTATCTGGCCTCCAAAATTTGGAGATCATGGACGTTAGCAACAATGAATTAAGGGGCTCTGTTCCTGGAGGCCTTTGCAAGTTGCCCAAATTGGCTAACTTCACTTTCTCCTTTAATTATTTTGATGGCGAAGATGCAACGTGTGTTGGAACTAAGGGATCAGAGAAACTCTTCGATGATGCTCAAAATTGTTTGGCGAATCAACCGGAGCAGAAAGATGCAAACAAATGTAACGTTGTCCTAAAGAAATCTGTGGATTGTGGATGCAGTGGTGGTGGTTCAGGTTCTCCCGGAGTGCCAATGACTCCTGAGGATCCATTTGATCAATCTCCATCGCCGAGATATAGGTCTCCACCACCTCCAGTGATCTCTCCACCAGAATCGATCGACACCTTGGTCCCAGAAGTGGAGACTCCTTCTGCCCCATCATTGTCACCAATCTCTGCTCCGTTCTCACCACCTAACCTTGAAACCCCCAATCCATCCCCAGTTGACTCTCTCGAACCACCGGTTCACTCACCACCACCCCCAGTCCATTCTCCACCACCACCGGTCCATTCTCCTCCACCACCGGTTCATTCCCCACCACCTCCTGTCCACTCTCCTCCACCACCAGTCCACTCCCCACCACCCCCTGTTCACTCCCCACCACCACCTGTCTCTTCTCCTCCACCACCAGTTCATTCCCCACCTCCTCCTGTTCACTCTCCACCTCCACCGGTCCACTCCCCACCACCACCGATCCACTCCCCACCACCACCGGTCCACTCCCCACCACCTCCACCAATTCCTTCTCCACCTCCTCCGGTCCACTCTCCACCACCACCGGTCCACTCCCCACCTCCACCTGTCCACTCCCCACCACCCCCGGTCCACTCTCCACCACCTCCGGTCCACTCCCCACCACCCCCGGTCCACTCCCCACCCCCACCAGTTTACTCCCCACCTCCACCAGTCCATTCTCCACCACCACCGATACACTCCCCACCCCCACCGGTTCATTCCCCACCCCCACCAGTTCATTCTCCACCGCCACCGGTCTACTCCCCACCGCCACCTGTCCATTCTCCACCACCACCTGTTTACTCCCCACCGCCACCAGTTCAATCTCCACCACCTCCAACTGCATCTCCGCCTCCTCCTCCTCCCGATTCTTCTCCACCGCCAACATTCGAGGACGTCATCCTCCCACCAAATATCGGCTTTCAATACACATCACCACCTCCACCACAGTTTCCTGGCTATTAA 2160 51.81 MASFHRKQANHACFLLLFLFFSLPSLSFSISKDEASYLTHRQLLALKEHDQLPDDYKYQLDIPDTFPNERLKKAYVALQAWKLAIYSDPQNMTANWVGADVCSYTGIYCTTALDDSDMEVVAGIDLNHGDIAGYLPPEIGLITDLALFHINSNRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPHVVLEWPTAKFLDLRYNDFEGEVPSTLFTKEFDAIFLNNNRFTSLIPDTIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFIGNKLDGCFPPEIGNLVNLTVFDASANGFIGHLPETLSGLQNLEIMDVSNNELRGSVPGGLCKLPKLANFTFSFNYFDGEDATCVGTKGSEKLFDDAQNCLANQPEQKDANKCNVVLKKSVDCGCSGGGSGSPGVPMTPEDPFDQSPSPRYRSPPPPVISPPESIDTLVPEVETPSAPSLSPISAPFSPPNLETPNPSPVDSLEPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVSSPPPPVHSPPPPVHSPPPPVHSPPPPIHSPPPPVHSPPPPPIPSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVHSPPPPIHSPPPPVHSPPPPVHSPPPPVYSPPPPVHSPPPPVYSPPPPVQSPPPPTASPPPPPPDSSPPPTFEDVILPPNIGFQYTSPPPPQFPGY 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4017717 4019876 - CmPI595203_06g003440.1 Cmu06g0344 418004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0344 719 PRINTS Proline rich extensin signature 488 513 - -
Cmu06g0344 719 PRINTS Proline rich extensin signature 413 425 - -
Cmu06g0344 719 PRINTS Proline rich extensin signature 425 446 - -
Cmu06g0344 719 PRINTS Proline rich extensin signature 452 468 - -
Cmu06g0344 719 PRINTS Proline rich extensin signature 470 487 - -
Cmu06g0344 719 MobiDBLite consensus disorder prediction 450 698 - -
Cmu06g0344 719 MobiDBLite consensus disorder prediction 408 431 - -
Cmu06g0344 719 Gene3D Ribonuclease Inhibitor 237 353 IPR032675 -
Cmu06g0344 719 Gene3D Ribonuclease Inhibitor 72 236 IPR032675 -
Cmu06g0344 719 Pfam Leucine rich repeat N-terminal domain 77 110 IPR013210 -
Cmu06g0344 719 FunFam Leucine-rich repeat extensin-like protein 1 75 236 - -
Cmu06g0344 719 Pfam Leucine Rich Repeat 310 332 IPR001611 GO:0005515(InterPro)
Cmu06g0344 719 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 13 618 IPR051582 -
Cmu06g0344 719 MobiDBLite consensus disorder prediction 394 719 - -
Cmu06g0344 719 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 254 348 - -
Cmu06g0344 719 SUPERFAMILY L domain-like 83 351 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0344 Cmu-Chr6:4017717 Cmu06g0349 Cmu-Chr6:4039723 6.30E-08 dispersed
Cmu06g0344 Cmu-Chr6:4017717 Cmu06g0345 Cmu-Chr6:4025262 6.30E-08 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0344 - - - 0.0