Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0345 ATGGCTTCTCTTCATAGAAAGCAAGCTAACCATGCTTGCTTTCTCCTCCTCTTCATCTTCTTTTCACTGCCATCTCTCTCCGTCTCCATCTCTGAAGCCGAAGCTTCGTATCTCACTCGTCGTCAACTTTTGGCTCTAAAAGAACACGATCAACTCCCAGATGATTACAAATACCAACTTGACATTCCTGACACTTTTCCAAATGAAAGGTTGAAGAAGGCTTACGTAGCCCTTCAAGCTTGGAAATTGGCCATTTATTCTGACCCTCAGAACATGACAGCCAATTGGGTTGGCGCCGATGTCTGTTCTTACACCGGCATCTACTGTACTACGGCGCTTGACAACTCAGACATGGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGTATTTGCCGCCAGAAATTGGCCTCATCACCGATTTGGCTCTCTTCCATATTAACTCTAACAGGTTCTGTGGGATCATTCCTTCCAGCTTCTCCAAGCTTGTTCTCATGTTCGAGTTTGATGTCAGCAACAACCGCTTCGTCGGCCATTTTCCTCACGTCGTCCTTGAATGGCCCACCGCTAAGTTCCTCGATCTCAGATATAATGACTTCGAAGGAGAAATCCCCTCCACACTCTTCACCAAGGAGTTCGATGCCATTTTCTTAAACAACAACAGATTCACCTCTCTAATTCCAGATACCATCGGAAACTCAACCGTCTCCGTTGTTTCCTTTGCCAACAATGAGTTCCATGGCTGCATTCCCAGCACCATTGGCCAAATGTCCAACCTCAACCAAATTCTCTTCATTGGCAACAAGCTTGGCGGCTGTTTCCCACCCGAGATCGGAAACCTCGTCAATCTTACGGTCTTCGATGCGAGCGCCAATGGCTTTATCGGCCAGCTGCCCGAAACCTTATCGGGCCTCCAAAATTTGGAGATTATGGACGTTAGCAACAATGAATTGAGGGGCTCTGTTCCTGGAGGCTTTTGCAAGTTGCCCAAATTAGCTAACTTCACTTTCTCGTTTAATTATTTTGATGGCAAAGATGCAGCGTGTGTTGAAACTAAGGGATCAGAGAAACTCTTTGATGATGCTCAAAATTGTTTGGCCAATCAACCGGAGCAGAAAGATGCAAACAAATGTAGCGTTGTCCTGAAGAAATCAGTGGACTGTGGAAACTGTGGTGGTGGTGGTTCAAGTTCTCCCGAAGTGCCAATGACTCCTGAAGATCCATTTGATCAATCTCCATCGCCGAGATATAGGTCTCCACCACCTCCAGTGACCTCTCCACCTAAATCGATCGACACCTCGGTCCCAGAAGTGGGGACTCCTCCTTCTCCAAGTGAGACTACTATTACATCATCACCACCGTCTCCAATTGAGTATTCACCACCAACCTCTGCACCACAATTGTCACCAACCTCTGCTCCATTATTATCACCAACCTCCGCTCCGATCTCACCACCTACCCTTGAAACCCCCAGTCCATCCCCAGCTGAATCTCCCGAACCACTAATTCACTCACCACCACCCCCAGCCCATTCCCCGCCACCACCGGTCCATTCTCCTCCACCACCGGTTCATTCCCCACCACCTCCTGTCCACTCTCCTCCACCACCAGTCCATTCTCCTCCACCACCGGTCCATTCTCCACCACCTCCTGTCCACTCTCCTCCACCACCGGTCTACTCCCCACCACCTCCTGTCCACTCTCCTCCACCACCGGTCCACTCCCCACCACCTCCTGTCCACTCTCCTCCACCACCAGTCCACTCCCCACCACCTCCTATTCACTCCCCACCACCACCTGTCTCCTCTCCTCCACCACCAGTTCATTCCCCACCTCCTCCTGTCCACTCTCCACCACCACCTATCCACTCCCCACCACCACCGGTCCACTCCCCACCACCCCCTGTCCACTCACCACCACCCCCCATTTATTCCCCCCCACCACCCGTCCACTCACCACCACCCCCCGTCCACTCTCCCCCACCCCCCGTCCATTCACCACCACCACCCGTCCACTCTCCACCCCCACCAGTTTACTCCCCACCCCCACCAGTTCATTCTCCACCCCCACCGGTGCACTCCCCACCCCCACCAGTCCATTCTCCACCACCGCCTGTTTACTCCCCACCGCCACCAGTCCAATCTCCACCACCTCCGACTGCATCTCCACCTCCTCCTCCTCCCGATTCTTCTCCACCGCCATCATTCGAGGACGTCATCCTCCCGCCAAATATCGGCTTTCAATATGCATCACCACCTCCACCACAGTTTCCTGGCTATTGA 2292 52.4 MASLHRKQANHACFLLLFIFFSLPSLSVSISEAEASYLTRRQLLALKEHDQLPDDYKYQLDIPDTFPNERLKKAYVALQAWKLAIYSDPQNMTANWVGADVCSYTGIYCTTALDNSDMEVVAGIDLNHGDIAGYLPPEIGLITDLALFHINSNRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPHVVLEWPTAKFLDLRYNDFEGEIPSTLFTKEFDAIFLNNNRFTSLIPDTIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFIGNKLGGCFPPEIGNLVNLTVFDASANGFIGQLPETLSGLQNLEIMDVSNNELRGSVPGGFCKLPKLANFTFSFNYFDGKDAACVETKGSEKLFDDAQNCLANQPEQKDANKCSVVLKKSVDCGNCGGGGSSSPEVPMTPEDPFDQSPSPRYRSPPPPVTSPPKSIDTSVPEVGTPPSPSETTITSSPPSPIEYSPPTSAPQLSPTSAPLLSPTSAPISPPTLETPSPSPAESPEPLIHSPPPPAHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPIHSPPPPVSSPPPPVHSPPPPVHSPPPPIHSPPPPVHSPPPPVHSPPPPIYSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVQSPPPPTASPPPPPPDSSPPPSFEDVILPPNIGFQYASPPPPQFPGY 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4025262 4027553 + CmPI595203_06g003450.1 Cmu06g0345 418005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0345 763 MobiDBLite consensus disorder prediction 482 742 - -
Cmu06g0345 763 SUPERFAMILY L domain-like 83 347 - -
Cmu06g0345 763 Pfam Leucine Rich Repeat 310 332 IPR001611 GO:0005515(InterPro)
Cmu06g0345 763 MobiDBLite consensus disorder prediction 433 457 - -
Cmu06g0345 763 Gene3D Ribonuclease Inhibitor 237 357 IPR032675 -
Cmu06g0345 763 PRINTS Pistil-specific extensin-like signature 485 508 IPR003882 -
Cmu06g0345 763 PRINTS Pistil-specific extensin-like signature 520 538 IPR003882 -
Cmu06g0345 763 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 13 655 IPR051582 -
Cmu06g0345 763 Gene3D Ribonuclease Inhibitor 72 236 IPR032675 -
Cmu06g0345 763 FunFam Leucine-rich repeat extensin-like protein 1 75 236 - -
Cmu06g0345 763 MobiDBLite consensus disorder prediction 467 481 - -
Cmu06g0345 763 MobiDBLite consensus disorder prediction 409 432 - -
Cmu06g0345 763 MobiDBLite consensus disorder prediction 396 763 - -
Cmu06g0345 763 Pfam Leucine rich repeat N-terminal domain 77 110 IPR013210 -
Cmu06g0345 763 FunFam Leucine-rich repeat receptor protein kinase EMS1 237 326 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0345 Cmu-Chr6:4025262 Cmu06g0349 Cmu-Chr6:4039723 6.00E-09 dispersed
Cmu06g0344 Cmu-Chr6:4017717 Cmu06g0345 Cmu-Chr6:4025262 6.30E-08 tandem
Cmu06g0345 Cmu-Chr6:4025262 Cmu06g0346 Cmu-Chr6:4029233 6.60E-32 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0345 - - - 0.0