Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0349 ATGGCTTCTCTTCATAGAAAGCAAGCTAACCATGCTTGCTTTCTCCTCCCCTTCCTCTTCTTTTCACTGCCATCTCTCTCCGTCTCCATCTCTGAAGCCGAAGCTTCGTATCTCACTCGTCGTCAACTTTTGGCTCTAAAAGAACACGATCAACTCCCAGATGATTACAAATACCAACTTGACATTCCTGACACTTTTCCAAATGAAAGGTTGAAGAAGGCTTACGTAGCCCTTCAAGCTTGGAAATTGGCCATTTATTCTGACCCTCAGAACATGACAGCCAATTGGGTTGGCGCCGATGTCTGTTCTTACACCGGCATCTACTGTACTACGGCGCTTGACAACTCAGACATGGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGTATTTGCCGCCAGAAATTGGCCTCATCACCGATTTGGCTCTCTTCCATATTAACTCTAACAGGTTCTGTGGGATCATTCCTTCCAGCTTCTCCAAGCTTGTTCTCATGTTCGAGTTTGATGTCAGCAACAACCGTTTCGTCGGCCATTTTCCTCACGTCGTCCTTGAATGGCCCACCGCTAAGTTCCTCGATCTCAGATATAATGACTTCGAAGGAGAAATCCCCTCCACACTCTTCACCAAGGAGTTCGATGCCATTTTCTTAAACAACAACAGATTCACCTCTCTAATTCCAGATACCATCGGAAACTCAACCGTCTCCGTTGTTTCCTTTGCCAACAATGAGTTCCATGGCTGCATTCCCAGCACCATTGGCCAAATGTCCAACCTCAACCAAATTCTCTTCATTGGCAACAAGCTTGGCGGCTGTTTCCCACCCGAGATCGGAAACCTCGTCAATCTTACGGTCTTCGATGCGAGCGCCAATGGCTTTATCGGCCAGCTGCCCGAAACCTTATCGGGCCTCCAAAATTTGGAGATTATGGACGTTAGCAACAATGAATTGAGGGGCTCTGTTCCTGGAGGCTTTTGCAAGTTGCCCAAATTAGCTAACTTCACTTTCTCGTTTAATTATTTTGATGGCAAAGATGCAGCGTGTGTTGGAACTAAGGGATCAGAGAAACTCTTTGATGATGCTCAAAATTGTTTGGCCAATCAACCGGAGCAGAAAGATGCAAACAAATGTAGCGTTGTCCTGAAGAAATCAGTGGACTGTGGAAACTGTGGTGGTGGTTCAAGTTCTCCCGAAGTGCCAATGACTCCTGAAGATCCATTTGATCAATCTCCATCGCCGAGATATAGGTCTCCACCACCTCCAGTGACCTCTCCACCTAAATCGATCGACACCTCGGTCCCAGAAGTGGGGACTCCTCCTTCTCCAAGTGAGACTTCTATTACATCATCACCACCGTCTCCAATTGAGTATTCACCACCAACCTCTGCACCACAATTGTCACCAACCTCTGCTCCATCATTATCACCAACCTCTGCTCCGATCTCACCACCTACCCTTGAAACCCCCAGTCCATCCCCAGCTGAATCTCCCGAACCACCAATTCATTCACCACCACCCCCAGTCCATTCCCCGCCACCATCGGTCTATTCTCCTCCACCACCGGTTCATTCCCCACCACCTCCTGTCCACTCTCCTCCACCACCAGTCCATTCTCCTCCACCACCAATTCATTCCCCACCACCTCCTGTCCACTCTCCTCCACCACCGGTCCATTCTCCACCACCTCCTGTCCACTCTCCTCCACCACCAGTCCACTCCCCACCACCTCCTATTCACTCCCCACCACCACCTGTCTCCTCTCCTCCACCACCAGTTCATTCCCCACCTCCTCCTGTCCACTCTCCACCACCACCTATCCACTCCCCACCACCCCCGGTCCACTCACCACCACCACCCGTCCACTCACCCCCACCCCCCGTCCACTCACCACCCCCACCAGTTTACTCCCCACCCCCACCAGTTCATTCTCCACCCCCACCGGTTCACTCCCCACCCCCACCAGTCCATTCTCCACCACCGCCTGTTTACTCCCCACCGCCACCAGTCCAATCTCCACCACCTCCAACTGCATCTCCACCTCCTCCTCCTCCCGATTCTTCTCCACCGCCATCATTCGAGGACGTCATCCTCCCGCCAAATATCGGCTTTCAATATGCATCACCACCTCCACCACAGTTTCCTGGCTATTGA 2163 51.32 MASLHRKQANHACFLLPFLFFSLPSLSVSISEAEASYLTRRQLLALKEHDQLPDDYKYQLDIPDTFPNERLKKAYVALQAWKLAIYSDPQNMTANWVGADVCSYTGIYCTTALDNSDMEVVAGIDLNHGDIAGYLPPEIGLITDLALFHINSNRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPHVVLEWPTAKFLDLRYNDFEGEIPSTLFTKEFDAIFLNNNRFTSLIPDTIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFIGNKLGGCFPPEIGNLVNLTVFDASANGFIGQLPETLSGLQNLEIMDVSNNELRGSVPGGFCKLPKLANFTFSFNYFDGKDAACVGTKGSEKLFDDAQNCLANQPEQKDANKCSVVLKKSVDCGNCGGGSSSPEVPMTPEDPFDQSPSPRYRSPPPPVTSPPKSIDTSVPEVGTPPSPSETSITSSPPSPIEYSPPTSAPQLSPTSAPSLSPTSAPISPPTLETPSPSPAESPEPPIHSPPPPVHSPPPSVYSPPPPVHSPPPPVHSPPPPVHSPPPPIHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPIHSPPPPVSSPPPPVHSPPPPVHSPPPPIHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVQSPPPPTASPPPPPPDSSPPPSFEDVILPPNIGFQYASPPPPQFPGY 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4039723 4041885 + CmPI595203_06g003490.1 Cmu06g0349 418009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0349 720 MobiDBLite consensus disorder prediction 408 431 - -
Cmu06g0349 720 SUPERFAMILY L domain-like 83 348 - -
Cmu06g0349 720 FunFam Leucine-rich repeat receptor protein kinase EMS1 237 326 - -
Cmu06g0349 720 Gene3D Ribonuclease Inhibitor 237 353 IPR032675 -
Cmu06g0349 720 Pfam Leucine Rich Repeat 310 332 IPR001611 GO:0005515(InterPro)
Cmu06g0349 720 Pfam Leucine rich repeat N-terminal domain 77 110 IPR013210 -
Cmu06g0349 720 Gene3D Ribonuclease Inhibitor 72 236 IPR032675 -
Cmu06g0349 720 MobiDBLite consensus disorder prediction 396 720 - -
Cmu06g0349 720 MobiDBLite consensus disorder prediction 432 456 - -
Cmu06g0349 720 FunFam Leucine-rich repeat extensin-like protein 1 75 236 - -
Cmu06g0349 720 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 14 717 IPR051582 -
Cmu06g0349 720 MobiDBLite consensus disorder prediction 481 699 - -
Cmu06g0349 720 PRINTS Pistil-specific extensin-like signature 484 507 IPR003882 -
Cmu06g0349 720 PRINTS Pistil-specific extensin-like signature 519 537 IPR003882 -
Cmu06g0349 720 MobiDBLite consensus disorder prediction 466 480 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0344 Cmu-Chr6:4017717 Cmu06g0349 Cmu-Chr6:4039723 6.30E-08 dispersed
Cmu06g0345 Cmu-Chr6:4025262 Cmu06g0349 Cmu-Chr6:4039723 6.00E-09 dispersed
Cmu06g0346 Cmu-Chr6:4029233 Cmu06g0349 Cmu-Chr6:4039723 2.50E-32 dispersed
Cmu06g0349 Cmu-Chr6:4039723 Cmu06g1076 Cmu-Chr6:20694770 6.20E-40 dispersed
Cmu06g0347 Cmu-Chr6:4029852 Cmu06g0349 Cmu-Chr6:4039723 4.90E-18 proximal
Cmu06g0349 Cmu-Chr6:4039723 Cmu06g0350 Cmu-Chr6:4043390 7.40E-09 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0349 - - - 0.0