Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0350 ATGGCTTCTCCTCATAGAAAGCAAGCTAACCATGCTTGCTTTCTCCTCCTCTTCCTCTTTTTGTCTCTGCCATCTCTCTCCGTCTCCATCTCAGAAGCCGAAGCTTCGTATCTCACTCGTCGTCAACTTTTGGCTCTAAAAGAACACGATCAACTCCCAGATGATTACAAATACCAACTTGACATTCCTGACACTTTTCCAAATGAAAGGTTGAAGAAGGCTTACGTAGCCCTTCAAGCTTGGAAATTGGCCATTTATTCTGACCCTCAGAACATGACAGCCAATTGGGTTGGCGCCGATGTCTGTTCTTACACCGGCATCTACTGTACTACGGCGCTTGACAACTCAGACATGGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGTATTTGCCGCCAGAAATTGGCCTCATCACCGATTTGGCTCTCTTCCATATTAACTCTAACAGGTTCTGTGGGATCATTCCTTCCAGCTTCTCCAAGCTTGTTCTCATGTTCGAGTTTGATGTCAGCAACAACCGTTTCGTCGGCCATTTTCCTCACGTCGTCCTTGAATGGCCCACCGCTAAGTTCCTCGATCTCAGATATAATGACTTCGAAGGAGAAATCCCCTCCACACTCTTCACCAAGGAGTTCGATGCCATTTTCTTAAACAACAACAGATTCACCTCTCTAATTCCAGATACCATCGGAAACTCAACCGTCTCCGTTGTTTCCTTTGCCAACAATGAGTTCCATGGCTGCATTCCCAGCACCATTGGCCAAATGTCCAACCTCAACCAAATTCTCTTCATTGGCAACAAGCTTGGCGGCTGTTTCCCACCCGAGATCGGAAACCTCGTCAATCTTACGGTCTTCGATGCGAGCGCCAATGGCTTTATCGGCCAGCTGCCCGAAACCTTATCGGGCCTCCAAAATTTGGAGATTATGGACGTTAGCAACAATGAATTGAGGGGCTCTGTTCCTGGAGGCTTTTGCAAGTTGCCCAAATTAACTAACTTCACTTTCTCGTTTAATTATTTTGACGGCAAAGATGCAGCATGTGTTGGAACTAAGGGATCAGAGAAACTCTTTGATGATGCTCAAAATTGTTTGGCCAATCAACCGGAGCAGAAAGATGCAAACAAATGTAGCGTTGTCCTAAAGAAATCAATGGACTGTGGAAACTGTGGTAGTGGTGGTTTAGGTTCTCCCAAAGTGCCAATGACTCCTGAGGATCCATTTGATCAATCTCCATCACCGAGATATAGGTCTCCACCACCTCCAGTGACCTCTCCACCTGAATCGATCGTACCACCAGTTCATTCACCACCACCTCCCGTTCATTCACCACCACCCCCAGTTCATTCCCCACCACCACCAATTCATTCCCCACCACCTCCTGTTAACTCTCCTCCACCACCGGTCCATTCTCCTCCACCACCAGTTCATTCCCCACCACCTCCTGTCCACTCTCCTCCACCGCCAGTCCACTCCCCTCCACCTCCTGTTCACTCCCCACCACCACCTGTCTCTTCTCCTCCACCACCAGTTCACTCCCCACCTCCACCTGTGTACTCTCCACCACCACCGGTCCACTCCCCACCTCCTCCTATCTACTCTCCACCACCACCGATCCACTACCCACCTCCACCGGTCCACTCCCCACCTCCACCAGTCCATTCCCCACCACCACCGGTCCACTCCCCACCTCCACCGGTCTACTCTCCACCGCCACTGGTCTACTCCCCACCACCCCCGGTCCATTCTCCACCAACTCCTGTTTACTCTCCACCGCCACCAGTCCAATCTCCACCACCTCCAACTGCATCTCCTCCTCCCGATTCTTCTCCACCGCCATCATTCGAGGACATCATCCTCCCCCCAAATATCGGCTTCCAATATGCATCACCACCTCCACCACAATTCCCTGGCTACTGA 1932 50.62 MASPHRKQANHACFLLLFLFLSLPSLSVSISEAEASYLTRRQLLALKEHDQLPDDYKYQLDIPDTFPNERLKKAYVALQAWKLAIYSDPQNMTANWVGADVCSYTGIYCTTALDNSDMEVVAGIDLNHGDIAGYLPPEIGLITDLALFHINSNRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPHVVLEWPTAKFLDLRYNDFEGEIPSTLFTKEFDAIFLNNNRFTSLIPDTIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFIGNKLGGCFPPEIGNLVNLTVFDASANGFIGQLPETLSGLQNLEIMDVSNNELRGSVPGGFCKLPKLTNFTFSFNYFDGKDAACVGTKGSEKLFDDAQNCLANQPEQKDANKCSVVLKKSMDCGNCGSGGLGSPKVPMTPEDPFDQSPSPRYRSPPPPVTSPPESIVPPVHSPPPPVHSPPPPVHSPPPPIHSPPPPVNSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVSSPPPPVHSPPPPVYSPPPPVHSPPPPIYSPPPPIHYPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPLVYSPPPPVHSPPTPVYSPPPPVQSPPPPTASPPPDSSPPPSFEDIILPPNIGFQYASPPPPQFPGY 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4043390 4045321 + CmPI595203_06g003500.1 Cmu06g0350 418010

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0350 643 SUPERFAMILY L domain-like 83 348 - -
Cmu06g0350 643 Gene3D Ribonuclease Inhibitor 72 239 IPR032675 -
Cmu06g0350 643 Pfam Leucine Rich Repeat 310 332 IPR001611 GO:0005515(InterPro)
Cmu06g0350 643 MobiDBLite consensus disorder prediction 397 534 - -
Cmu06g0350 643 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 254 348 - -
Cmu06g0350 643 FunFam Leucine-rich repeat extensin-like protein 1 75 236 - -
Cmu06g0350 643 MobiDBLite consensus disorder prediction 409 534 - -
Cmu06g0350 643 Gene3D Ribonuclease Inhibitor 240 382 IPR032675 -
Cmu06g0350 643 PRINTS Proline rich extensin signature 454 471 - -
Cmu06g0350 643 PRINTS Proline rich extensin signature 416 437 - -
Cmu06g0350 643 PRINTS Proline rich extensin signature 437 453 - -
Cmu06g0350 643 PRINTS Proline rich extensin signature 472 497 - -
Cmu06g0350 643 MobiDBLite consensus disorder prediction 547 622 - -
Cmu06g0350 643 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 13 640 IPR051582 -
Cmu06g0350 643 Pfam Leucine rich repeat N-terminal domain 77 110 IPR013210 -
Cmu06g0350 643 MobiDBLite consensus disorder prediction 547 643 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0350 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0347 Cmu-Chr6:4029852 Cmu06g0350 Cmu-Chr6:4043390 1.40E-17 dispersed
Cmu06g0350 Cmu-Chr6:4043390 Cmu06g1076 Cmu-Chr6:20694770 1.10E-38 dispersed
Cmu06g0349 Cmu-Chr6:4039723 Cmu06g0350 Cmu-Chr6:4043390 7.40E-09 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu05g0534 . 32 363 Leucine-rich Repeat extension Gene Families AT1G62440 63.4 4.7e-49 193.4
Cmu11g0242 . 73 424 Leucine-rich Repeat extension Gene Families AT1G62440 63.0 6.8e-48 189.5
Cmu07g0291 . 27 374 Leucine-rich Repeat extension Gene Families AT1G62440 56.7 4.6e-44 176.8
Cmu05g2010 . 64 259 Leucine-rich Repeat extension Gene Families AT1G62440 60.2 2.8e-41 167.5
Cmu06g1076 . 61 233 Leucine-rich Repeat extension Gene Families AT1G62440 68.8 8.1e-41 166.0
Cmu11g0242 . 38 424 Leucine-rich Repeat extension Gene Families AT4G13340 75.8 5.9e-73 272.7
Cmu06g1076 . 15 405 Leucine-rich Repeat extension Gene Families AT4G13340 74.3 1.4e-66 251.5
Cmu05g0534 . 18 365 Leucine-rich Repeat extension Gene Families AT4G13340 69.9 3.8e-56 216.9
Cmu07g0291 . 38 375 Leucine-rich Repeat extension Gene Families AT4G13340 62.5 9.8e-44 175.6
Cmu05g2010 . 64 253 Leucine-rich Repeat extension Gene Families AT4G13340 66.8 1.3e-43 175.3
Cmu06g0345 . 15 225 Leucine-rich Repeat extension Gene Families AT4G13340 53.4 1.5e-39 161.8
Cmu06g0349 . 22 225 Leucine-rich Repeat extension Gene Families AT4G13340 54.9 2.5e-39 161.0
Cmu06g0344 . 15 225 Leucine-rich Repeat extension Gene Families AT4G13340 52.5 1.6e-38 158.3
Cmu06g0350 . 34 225 Leucine-rich Repeat extension Gene Families AT4G13340 56.8 1.6e-38 158.3
Cmu11g0242 . 38 420 Leucine-rich Repeat extension Gene Families AT3G24480 74.5 1.2e-77 287.7
Cmu06g1076 . 24 400 Leucine-rich Repeat extension Gene Families AT3G24480 74.6 8.6e-73 271.6
Cmu05g0534 . 25 365 Leucine-rich Repeat extension Gene Families AT3G24480 67.0 1.4e-54 211.1
Cmu07g0291 . 45 396 Leucine-rich Repeat extension Gene Families AT3G24480 58.5 2.6e-45 180.3
Cmu05g2010 . 64 253 Leucine-rich Repeat extension Gene Families AT3G24480 65.3 5.8e-45 179.1
Cmu06g0345 . 25 399 Leucine-rich Repeat extension Gene Families AT3G24480 50.1 2.5e-40 163.7
Cmu06g0350 . 34 397 Leucine-rich Repeat extension Gene Families AT3G24480 50.3 1.8e-38 157.5
Cmu05g0534 . 15 364 Leucine-rich Repeat extension Gene Families AT3G22800 72.4 9.0e-72 268.1
Cmu07g0291 . 45 374 Leucine-rich Repeat extension Gene Families AT3G22800 64.7 2.0e-50 197.2
Cmu11g0242 . 85 418 Leucine-rich Repeat extension Gene Families AT3G22800 64.0 1.7e-41 167.5
Cmu06g1076 . 73 401 Leucine-rich Repeat extension Gene Families AT3G22800 62.5 8.5e-38 155.2
Cmu06g1076 . 47 405 Leucine-rich Repeat extension Gene Families AT5G25550 61.2 2.9e-40 163.3
Cmu11g0242 . 59 418 Leucine-rich Repeat extension Gene Families AT5G25550 60.5 7.1e-39 158.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000785 1 2 1 1 0 5 5 5 5 1 2 5 5 4 2 4 4 4 3 4 4 3 2 4 3 3 5 2 2 1 92