Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0350 ATGGCTTCTCCTCATAGAAAGCAAGCTAACCATGCTTGCTTTCTCCTCCTCTTCCTCTTTTTGTCTCTGCCATCTCTCTCCGTCTCCATCTCAGAAGCCGAAGCTTCGTATCTCACTCGTCGTCAACTTTTGGCTCTAAAAGAACACGATCAACTCCCAGATGATTACAAATACCAACTTGACATTCCTGACACTTTTCCAAATGAAAGGTTGAAGAAGGCTTACGTAGCCCTTCAAGCTTGGAAATTGGCCATTTATTCTGACCCTCAGAACATGACAGCCAATTGGGTTGGCGCCGATGTCTGTTCTTACACCGGCATCTACTGTACTACGGCGCTTGACAACTCAGACATGGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGTATTTGCCGCCAGAAATTGGCCTCATCACCGATTTGGCTCTCTTCCATATTAACTCTAACAGGTTCTGTGGGATCATTCCTTCCAGCTTCTCCAAGCTTGTTCTCATGTTCGAGTTTGATGTCAGCAACAACCGTTTCGTCGGCCATTTTCCTCACGTCGTCCTTGAATGGCCCACCGCTAAGTTCCTCGATCTCAGATATAATGACTTCGAAGGAGAAATCCCCTCCACACTCTTCACCAAGGAGTTCGATGCCATTTTCTTAAACAACAACAGATTCACCTCTCTAATTCCAGATACCATCGGAAACTCAACCGTCTCCGTTGTTTCCTTTGCCAACAATGAGTTCCATGGCTGCATTCCCAGCACCATTGGCCAAATGTCCAACCTCAACCAAATTCTCTTCATTGGCAACAAGCTTGGCGGCTGTTTCCCACCCGAGATCGGAAACCTCGTCAATCTTACGGTCTTCGATGCGAGCGCCAATGGCTTTATCGGCCAGCTGCCCGAAACCTTATCGGGCCTCCAAAATTTGGAGATTATGGACGTTAGCAACAATGAATTGAGGGGCTCTGTTCCTGGAGGCTTTTGCAAGTTGCCCAAATTAACTAACTTCACTTTCTCGTTTAATTATTTTGACGGCAAAGATGCAGCATGTGTTGGAACTAAGGGATCAGAGAAACTCTTTGATGATGCTCAAAATTGTTTGGCCAATCAACCGGAGCAGAAAGATGCAAACAAATGTAGCGTTGTCCTAAAGAAATCAATGGACTGTGGAAACTGTGGTAGTGGTGGTTTAGGTTCTCCCAAAGTGCCAATGACTCCTGAGGATCCATTTGATCAATCTCCATCACCGAGATATAGGTCTCCACCACCTCCAGTGACCTCTCCACCTGAATCGATCGTACCACCAGTTCATTCACCACCACCTCCCGTTCATTCACCACCACCCCCAGTTCATTCCCCACCACCACCAATTCATTCCCCACCACCTCCTGTTAACTCTCCTCCACCACCGGTCCATTCTCCTCCACCACCAGTTCATTCCCCACCACCTCCTGTCCACTCTCCTCCACCGCCAGTCCACTCCCCTCCACCTCCTGTTCACTCCCCACCACCACCTGTCTCTTCTCCTCCACCACCAGTTCACTCCCCACCTCCACCTGTGTACTCTCCACCACCACCGGTCCACTCCCCACCTCCTCCTATCTACTCTCCACCACCACCGATCCACTACCCACCTCCACCGGTCCACTCCCCACCTCCACCAGTCCATTCCCCACCACCACCGGTCCACTCCCCACCTCCACCGGTCTACTCTCCACCGCCACTGGTCTACTCCCCACCACCCCCGGTCCATTCTCCACCAACTCCTGTTTACTCTCCACCGCCACCAGTCCAATCTCCACCACCTCCAACTGCATCTCCTCCTCCCGATTCTTCTCCACCGCCATCATTCGAGGACATCATCCTCCCCCCAAATATCGGCTTCCAATATGCATCACCACCTCCACCACAATTCCCTGGCTACTGA 1932 50.62 MASPHRKQANHACFLLLFLFLSLPSLSVSISEAEASYLTRRQLLALKEHDQLPDDYKYQLDIPDTFPNERLKKAYVALQAWKLAIYSDPQNMTANWVGADVCSYTGIYCTTALDNSDMEVVAGIDLNHGDIAGYLPPEIGLITDLALFHINSNRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPHVVLEWPTAKFLDLRYNDFEGEIPSTLFTKEFDAIFLNNNRFTSLIPDTIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFIGNKLGGCFPPEIGNLVNLTVFDASANGFIGQLPETLSGLQNLEIMDVSNNELRGSVPGGFCKLPKLTNFTFSFNYFDGKDAACVGTKGSEKLFDDAQNCLANQPEQKDANKCSVVLKKSMDCGNCGSGGLGSPKVPMTPEDPFDQSPSPRYRSPPPPVTSPPESIVPPVHSPPPPVHSPPPPVHSPPPPIHSPPPPVNSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVSSPPPPVHSPPPPVYSPPPPVHSPPPPIYSPPPPIHYPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPLVYSPPPPVHSPPTPVYSPPPPVQSPPPPTASPPPDSSPPPSFEDIILPPNIGFQYASPPPPQFPGY 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4043390 4045321 + CmPI595203_06g003500.1 Cmu06g0350 418010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0350 643 SUPERFAMILY L domain-like 83 348 - -
Cmu06g0350 643 Gene3D Ribonuclease Inhibitor 72 239 IPR032675 -
Cmu06g0350 643 Pfam Leucine Rich Repeat 310 332 IPR001611 GO:0005515(InterPro)
Cmu06g0350 643 MobiDBLite consensus disorder prediction 397 534 - -
Cmu06g0350 643 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 254 348 - -
Cmu06g0350 643 FunFam Leucine-rich repeat extensin-like protein 1 75 236 - -
Cmu06g0350 643 MobiDBLite consensus disorder prediction 409 534 - -
Cmu06g0350 643 Gene3D Ribonuclease Inhibitor 240 382 IPR032675 -
Cmu06g0350 643 PRINTS Proline rich extensin signature 454 471 - -
Cmu06g0350 643 PRINTS Proline rich extensin signature 416 437 - -
Cmu06g0350 643 PRINTS Proline rich extensin signature 437 453 - -
Cmu06g0350 643 PRINTS Proline rich extensin signature 472 497 - -
Cmu06g0350 643 MobiDBLite consensus disorder prediction 547 622 - -
Cmu06g0350 643 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 13 640 IPR051582 -
Cmu06g0350 643 Pfam Leucine rich repeat N-terminal domain 77 110 IPR013210 -
Cmu06g0350 643 MobiDBLite consensus disorder prediction 547 643 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0347 Cmu-Chr6:4029852 Cmu06g0350 Cmu-Chr6:4043390 1.40E-17 dispersed
Cmu06g0350 Cmu-Chr6:4043390 Cmu06g1076 Cmu-Chr6:20694770 1.10E-38 dispersed
Cmu06g0349 Cmu-Chr6:4039723 Cmu06g0350 Cmu-Chr6:4043390 7.40E-09 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0350 - - - 0.0