Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0402 ATGCGAATGGGAAAATACGAGCTGGGAAGAACAATCGGGCATGGCAGTTTCAGTAAGGTCAAATTTGCTATAAACCTTGAAACTGGCCAACCTTTTGCTATCAAGGTTCTCGAGAAGACCAAAATCATCAATCTCAATTTCACGAATCAGTTTAAAAGGGAAATACGAACCCTCAAACTTCTAAAGCATCCAAATATAGTTAGGCTATACGAGGTGTTGGCCAGTAAAAGCAAAATTTATATGGTTCTTGAGTATGTGAATGGCGGAGAATTGTATAATAGAATCGCATTGAAAGGGAAGGTATCAGAAGACGAAGGCAGAAAAATCTTCCAACAGTTAATTGATGGTGTGAGTTACTGCCATAGGAAAGGTGTTTACCATAGGGATCTCAAGCTAGAGAACATACTTGTGGATGCTAGAGGAAATATCAAGATATCTGATTTTGGATTAAGTGCATTACAAGAGCATTTAAGGATCTTGAAAGGAGAAACTCAATTACCAATGTGGCTGTCACAAGGGGCCCAAAAGTTAATTAGACGGATTCTTGATCCTAACCCTATTTTTAGGGCAACTATGGAATCCATCAAAATAGACCATTGGTTTAGTAAGGACTATCATCCACCCAACTTTTACGATGAAGATCAAGAGGATATATACGTGGCCATCTCAACGAATCAAGAGAGTTCAGAGTCTCCCACTACTATAAATGCTTTTCAACTAATTGGAATGTCCTTATGCTTGGACCTTTCAAGTTTCTTTGAGGAAGAGGACATTTCGGAAAGGAAGATAAGATTTACAATCAATCACTCTACAAAAGAAGATACCATTAAGCGAATGGAGGATCTTGTAACAGATATGGGGTTTCTTGTCCAAAAGAAGGAAGGAAGGTTGAAAGTAATTAGAGAGGAAAGGGGTGAGAATGGTGTGGGCAGCATATTTTCAATATCAGCTCAGGTTTTTGAGATATGTCCATCACTATTCGTTGTAGAATTAAGAAAGTTGCATGGAGATTCATCTTCATTTAGACAGATCGTCGCAACTTACGCTTCCGGCGAAATGGCCAGCGGCTTGCAGATGAGTCCTCAGTTAGAGCAGATCCATGGGGAAATTCGTGACAATTTTCGGGCTCTTTCAAATGGGTTCCAAAGACTGGATAAGATCAAAGATTCCAGTAGACAAAGTAAGCAGTTGGAGGAGCTCACAGGAAAGATGAGGGAATGTAAAAGATTAATAAAAGATTTTGACCGTGAAATCAAGGAGGAAGAGAGTAAAAATCCACCGGAAGTGAATAAGCAGCTCAATGATGAGAAGCAATCAATGATCAAGGAGCTGAATTCATTTGTTGCATTGAGGAAAACGTATATGAATAGTCTTGGTAATAAAAGGGTTGAGCTATTTGATGAGGGAGGTGTAAGTGAACCTACAGCTGATGATAATGTTCGGATGGCCTCATCAATGACAAATCAAGAACTTATAGATGCTGGGAAGAAGACAATGGATGAAACCGATCAGGCTATTGAACGCACGCAAAAGGTGGTTGAACAAACTATTGAAGTGGGAACTCAAACTGCTGTTACATTAAAAGGCCAAACTGAGCAAATGGGCCGTATAGTAAATGAGCTTGACACAATTAATTTTTCAATTAAGAAGGCTTCCCAGCTTGTGAAAGAAATTGGCAGACAGGTTGCTACAGATAAATGCATCATGCTGTTTCTGTTCCTAATTGTCTGTGGAGTAATAGCCATTATTGTAGTTAAGATTGTGAACCCCAACAACAAAAACATCAGGGATATTCCTGGATTGGCACCTCCAGCTCCTGCAAGGAGGCTTTTGTATCTGAGGACACCTGAACATTTCAAGTAA 1863 39.56 MRMGKYELGRTIGHGSFSKVKFAINLETGQPFAIKVLEKTKIINLNFTNQFKREIRTLKLLKHPNIVRLYEVLASKSKIYMVLEYVNGGELYNRIALKGKVSEDEGRKIFQQLIDGVSYCHRKGVYHRDLKLENILVDARGNIKISDFGLSALQEHLRILKGETQLPMWLSQGAQKLIRRILDPNPIFRATMESIKIDHWFSKDYHPPNFYDEDQEDIYVAISTNQESSESPTTINAFQLIGMSLCLDLSSFFEEEDISERKIRFTINHSTKEDTIKRMEDLVTDMGFLVQKKEGRLKVIREERGENGVGSIFSISAQVFEICPSLFVVELRKLHGDSSSFRQIVATYASGEMASGLQMSPQLEQIHGEIRDNFRALSNGFQRLDKIKDSSRQSKQLEELTGKMRECKRLIKDFDREIKEEESKNPPEVNKQLNDEKQSMIKELNSFVALRKTYMNSLGNKRVELFDEGGVSEPTADDNVRMASSMTNQELIDAGKKTMDETDQAIERTQKVVEQTIEVGTQTAVTLKGQTEQMGRIVNELDTINFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKNIRDIPGLAPPAPARRLLYLRTPEHFK 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4592160 4610251 + CmPI595203_06g004020.1 Cmu06g0402 418062

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0402 620 CDD SNARE_SNAP25N_23N_29N_SEC9N 495 557 IPR044766 GO:0005484(InterPro)|GO:0031201(InterPro)
Cmu06g0402 620 ProSiteProfiles NAF domain profile. 230 254 IPR018451 GO:0007165(InterPro)
Cmu06g0402 620 Pfam NAF domain 232 292 IPR004041 GO:0007165(InterPro)
Cmu06g0402 620 CDD CIPK_C 236 344 - -
Cmu06g0402 620 FunFam novel plant SNARE 11 487 566 - -
Cmu06g0402 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu06g0402 620 SUPERFAMILY SNARE fusion complex 486 559 - -
Cmu06g0402 620 FunFam Maternal embryonic leucine zipper kinase 2 156 - -
Cmu06g0402 620 FunFam Non-specific serine/threonine protein kinase 1 85 - -
Cmu06g0402 620 SMART tSNARE_6 491 558 IPR000727 -
Cmu06g0402 620 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 158 342 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cmu06g0402 620 SUPERFAMILY Protein kinase-like (PK-like) 2 222 IPR011009 -
Cmu06g0402 620 Coils Coil 397 424 - -
Cmu06g0402 620 FunFam Non-specific serine/threonine protein kinase 230 355 - -
Cmu06g0402 620 SMART serkin_6 6 201 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g0402 620 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524(InterPro)
Cmu06g0402 620 Gene3D Kinase associated domain 1, KA1 229 364 - -
Cmu06g0402 620 ProSiteProfiles Protein kinase domain profile. 6 276 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g0402 620 Gene3D Transferase(Phosphotransferase) domain 1 1 158 - -
Cmu06g0402 620 Pfam Protein kinase domain 6 154 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g0402 620 Gene3D - 487 566 - -
Cmu06g0402 620 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 496 558 IPR000727 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0402 K08494 - - csv:101206271 468.774
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0763 Cmu-Chr5:6711538 Cmu06g0402 Cmu-Chr6:4592160 9.20E-111 dispersed
Cmu06g0402 Cmu-Chr6:4592160 Cmu10g1054 Cmu-Chr10:2680326 1.30E-86 dispersed
Cmu06g0398 Cmu-Chr6:4546845 Cmu06g0402 Cmu-Chr6:4592160 1.00E-17 proximal
Cmu06g0401 Cmu-Chr6:4576391 Cmu06g0402 Cmu-Chr6:4592160 2.30E-143 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g255 Blo01g00024 Blo12g00374 Bda03g00835 . Bpe04g00791 . Bma04g00734 Bma05g00986 . . . . . . . . . . . . . . . . Cla06g00393 Cam06g0415 Cec06g0423 Cco06g0423 Clacu06g0402 Cmu06g0402 Cre06g1181 Cone14ag0681 Cone15ag0693 . . . . . . . . . . . . . . . . . . . . . Cpe12g00349 . Bhi12g01996 . . . Hepe03g0009 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001212 4 4 3 3 2 2 6 2 2 2 2 2 3 3 2 3 2 4 3 2 2 2 2 2 2 2 2 2 2 2 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75592 PF00069 Pkinase 5.50E-47 CL0016 Cmu PK