Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0403 ATGGCTCCTGATCTAAACACGACACTTTCCAAGAAGACGTTTGTTTTTGGTATGAAGGTATGGGTGTTTACTGGGATCCTGGTTGGGGTGTTTATTGTAATAGTCCTTGTAGTGTTATCAATATGTGTTACTTCACGAAGAAAATCTAGAAGGGTAAGTGGCATGCTTCCTCTCAACCGTATTTCCATTGCATCAAAGGAAATCAAGGAGATTGGAGTGGATCATGTTACACCAATCCAACAGGGTTCCCTCCCCCACGATGGATTCGACACAGAATCAGAAAAAGTTCTTCTATATTCAAACAAGGCATACAATTACAGCATATCAGGCTCAGTTGATCACACAGAGATATATGCTATTGGCTCTGGAGAAGGGAGCAAGGAAGCAAGTGTTTTGCAAAGACCCTCAGATTCAATACCATCGAATCCTTCGCCACTGGCTGGTCTGCCAGAGTTCTCACAACTGGGATGGGGTCACTGGTTCACCTTAAGAGACCTGGAACTTGCAACAATGCATTTTTCAAACGATAATATAATTGGGGAGGGAGGATATGGAGTTGTTTATCGAGGTCATCTTATCAATGGGACACCTGTAGCTGTCAAAAAGCTTTTAAGTTTAGGACAAGCGGAAAGGGAATTCAGAGTGGAAGTAGAAGCATTTGGGCATGTGCGGCATAAGAACTTAGTACGGCTCCTGGGATACTGCATTGAAGGAACGCACAGGATACTAGTATATGAGTACGTGGATAATGGAAATCTAGAGCAGTGGCTTCACGGAGCTCTATGTCAGCATGGATATCTCACTTGGGAAGCAAGAATCAAAATTCTCCTTGGTACTGCTAAGGCACTGGCATATTTGCATGAGGCAATCGAGCCAAAAATCGTCCATCGAGATATCAAGGCAAGCAACATATTGATTGATGATGAGTTTAATGCAAAACTATCAGACTTTGGGCTGGCCAAATTACTCGGTGCTGGGAAGAGCCACATTACCACCAGAGTTATGGGTACGTTTGGATATGTGGCACCAGAATATGCCAAATCTGGGCTTCTAAATGAGAAGAGCGATGTTTATAGTTTTGGAGTGGTACTTTTGGAAGCAATTACTGGAAGAGACCCTGTTGATTATGGTCGCCCAACACATGAGGTAAATTTGGTGGATTGGCTAAAGATGATGGTAGGGAGCAAACGGTCAGAAGAGGTGGTAGATCCAAATATAGAGAGAAAGCCATCAATTAGTGAACTGAAGCGAGTTCTTTTGACTGCTTTGAGGTGTGTGGATCCAGATGCTGATAAGAGGCCTAAGATGAGCCAAGTTTCCCGCATGCTCGAGTCTGAAGAATATCCAATTCCTCGACAGGACCGGAGACCCAGAAAAAGCAATGCCATTGCGACCAAAATGGAGACTGAGAAACAGGAAAGAGGACCCAGACGACACAGATAA 1443 43.87 MAPDLNTTLSKKTFVFGMKVWVFTGILVGVFIVIVLVVLSICVTSRRKSRRVSGMLPLNRISIASKEIKEIGVDHVTPIQQGSLPHDGFDTESEKVLLYSNKAYNYSISGSVDHTEIYAIGSGEGSKEASVLQRPSDSIPSNPSPLAGLPEFSQLGWGHWFTLRDLELATMHFSNDNIIGEGGYGVVYRGHLINGTPVAVKKLLSLGQAEREFRVEVEAFGHVRHKNLVRLLGYCIEGTHRILVYEYVDNGNLEQWLHGALCQHGYLTWEARIKILLGTAKALAYLHEAIEPKIVHRDIKASNILIDDEFNAKLSDFGLAKLLGAGKSHITTRVMGTFGYVAPEYAKSGLLNEKSDVYSFGVVLLEAITGRDPVDYGRPTHEVNLVDWLKMMVGSKRSEEVVDPNIERKPSISELKRVLLTALRCVDPDADKRPKMSQVSRMLESEEYPIPRQDRRPRKSNAIATKMETEKQERGPRRHR 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4618965 4621711 + CmPI595203_06g004030.1 Cmu06g0403 418063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0403 480 ProSiteProfiles Protein kinase domain profile. 173 449 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g0403 480 CDD STKc_IRAK 179 444 - -
Cmu06g0403 480 ProSitePatterns Serine/Threonine protein kinases active-site signature. 294 306 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu06g0403 480 PANTHER OS01G0323000 PROTEIN 1 470 IPR052232 -
Cmu06g0403 480 MobiDBLite consensus disorder prediction 447 480 - -
Cmu06g0403 480 SUPERFAMILY Protein kinase-like (PK-like) 157 454 IPR011009 -
Cmu06g0403 480 ProSitePatterns Protein kinases ATP-binding region signature. 179 202 IPR017441 GO:0005524(InterPro)
Cmu06g0403 480 MobiDBLite consensus disorder prediction 430 480 - -
Cmu06g0403 480 FunFam Putative receptor-like serine/threonine-protein kinase 248 459 - -
Cmu06g0403 480 Pfam Protein kinase domain 175 440 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g0403 480 Gene3D Phosphorylase Kinase; domain 1 153 247 - -
Cmu06g0403 480 FunFam serine/threonine-protein kinase PBS1-like 149 247 - -
Cmu06g0403 480 SMART serkin_6 173 443 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g0403 480 Gene3D Transferase(Phosphotransferase) domain 1 248 457 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1832 Cmu-Chr2:32243744 Cmu06g0403 Cmu-Chr6:4618965 1.20E-145 dispersed
Cmu06g0403 Cmu-Chr6:4618965 Cmu09g2146 Cmu-Chr9:37542689 8.70E-155 dispersed
Cmu11g1509 Cmu-Chr11:27408296 Cmu06g0403 Cmu-Chr6:4618965 2.60E-25 dispersed
Cmu02g1465 Cmu-Chr2:28436592 Cmu06g0403 Cmu-Chr6:4618965 2.90E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75593 PF00069 Pkinase 4.20E-48 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0403 - - - 0.0