Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0406 ATGCATGTAGCAACAATGGCACTCCAAGAGTTACCGGTTGATGTTCCACATTTTGACCTTGAGGAAGATCCATCTTTCTGGAAGGATCACAACGTGCAGGTAATGATACGTATTCGACCCTTGAGTACTACGGAGAGAGACTCTCAAGGTTATGGTCGATGCTTGCGACAGGAAACCGCAAAGACTCTTGTGTGGCTTGGTCACCCAGAAACCAGATTCACCTTTGATCATATAGCTTGCGAAACAATATCACAGACTGGTAGTGGCAAAACATATACCATGATGGGTGGGATATACGAGGTGGAGGGCAAACTCAACGAAGATTGTGGACTAACTTTACGCATTTTTGAGCATTTGTTTACAAGAATTGGAATGGAAGAAAAGAGCAAGCAGGATGTCAAATTGAAATATAGCTGCAAATGTTCCTTTCTAGAAATTTATAATGAGCAAATAACAGACCTCTTGGAACCTTCATCAACTAATTTGCAACTCAGGGAAGACTTGAAGAAAGGAGTCTACGTGGAGAATCTCACAGAACACAGTGTCACAACTATAAACGATGTCGTCAAGCTTCTCTTGCAGGGTGCTGCAAACAGAAAGATGGCTGCTACATATATGAACAGTGAGAGTAGCCGCTCCCACAGTGTTTTTACTTGTATAATTGAAAGTCACTGGGAGAAAGATTCTAGAACTCACTTTAGATTTGCGAGCTCAGCCAATGAAACACTAAGCACTCTCAAATTTGCGCAGCGTGCCAAACAGATTCAGAACAATGCAAAAGTTAACGAGTGTGCTTCAGGTGATGAAACTGCACTCCAAAGGCAAATCCTACACTTGAAGGGTCAGTTGTCCTTTCTACTGAAGCACAGTAATTTTCCAAGGTCTATACTAAATAGCGTTCCAAGACTTGAAGAGTCTGGAGTAAGTGCTCTGTTTGAAGGCTATGATGCATTAGGGGGTAGAATGCAAACTGAAAATCGTAAGATGAAACTCATGGAAGCTTCCTTAATTGGTGCATTAAGGAGGGAAGAAGTGGCCAATGCTACAATAAAAAAGCTTGAGTTCGAGATTGAACACATGAAGTGCTTGGCTTTCCAACAAGAGGAGGATGGTCAACGTACTAAAATGTTGTTAAAATTTCGTGAGGAGAAGATCAGACAACTTGAATTGTTTTTAGGTGGGATGCTGTCCGCTGACCAATATCTTTTAGAGGAAAACAAGGCCTTAGCGGTAGAGATTAAGATGCTTCAAGCAAAGATTAACCGAAATCCAGAACTGACAAGAGTCTCTTTTGAGAATTCTAAACTCACCGAGCAACTTCAAGTGTATCAAAATTTTTATGAGCTAGGAGAGCGTGAAGTGTTGCTAACTGAAGTTTCAGAATTACGCAATGAGCTTCTGATGGCTCTGGGAAAAAACTCAACCATATCTGAACAAGATAAATATCAGGATGAAACAATGTCCATCAAGAGTTATACCCAAGATGACACGCTATCTTATATTACAGGAAGTGATGAGAACTTCGAAAATACAATAGGTCAAGGTTCAGACAATGAACTTGGAGCAAAGCCCATTTGTTCTCAGAAAGATCTGATCGATGCAAAAATGTTGGCTCAATCAATGGATTCAGATAACACTATGCAAGCTGAGAATCATGGATGCAAGCAGTTCAAACACTGCATGGTGGAAAACTTCTTAAATAAATCCAATGTTACAAAATGTCAAAATGAAGGAAATGTGATGAACCAACATGAAGATGTTGACAACAAAACTTTGCAAGTCAAGTTGGAAAACTTGACTAGGGAACTTGAGGAAGTCAGATTATCTAATATTCAGTATCAAGAAAATCAGAACCAACAGAACCAAAGTGAAGATGTGCGTCAACAGGTTGAGATGGAGACAGCCAATACAATTCTTCAATTACAGGAAGAGGTTGAAACTCTTCAGTTAGAACTTAATGATAGGTTACATGGCTTAGCCCAGGAAAATACACGACTGAAAGATTTGTTGTCTGCAAAACATGAGGAGATGAGGATGCTATGTATTGACTGGGAAACAGCAATGGTAGAACTAACAAATTTCCTTCTCGATGGTTCTAAATCTATCAGAGATGCACATGGGCAGATAGAAAGTATCGCTAATTTGTTTCCTAAAGTAAATGTTGGAATTAGTGAACAAGTGCAGCAGGCGATCAAAGTTTGTATCGAAAAAGAAGAAACAATTCTGTTATTGCATAAAAGTTTGGAAGATGCACGACTCATGGTGAAAGAAATGGAGCTGAAGTTAGATTCTCTGAAGGAAGCAACACTCGCCCTAAATGAATCACAACAAATGGATGATAATATTAGTGCTGCAGGTGCTAAACCATTGAGCACTCAGATGACTGACGAGAATATTATGGTAGAGTTTCTAGGCAAAAGACTTGGAGTTAAGAATGATCAGTTAAGTGAGGCAGAGAAATCTGCTGATGCTGCAGTCATTGCAGTAGAATGGTCATCCCAACCTCAGGAGCTGGCCTGCTGTTATAACATTGAGAGAGAGATGCCCATCTCAAAGTTGGATGTTTCATCTCAAAGAAGCAGTCACATCTTTGATGATGTAATGGCCAATGTGAATGAATTACTGCTGGAAGAATCAGATACTGAAAGCAATATGATATGGTTAGGTTTAGCGGAGTTAAAGAATATAACCAGTGGACATTATGCAGACATGGAAATGCATATTTCAGCTCTCCATATCTACATTCAAAACCTGTATTCTGAATATCAAGATTTAGTCCAGGACATGGTTAGCGAAATTCATGAATTGAGGTTAAAGGCCAAGACATCAAATGAAAATTGTAAAAGTCTCCAATTCTTCAAAGATAAAGATCAACCAGCACACAAATATTGGAATGTTGAAAACCAAAATAGTATTTTGGATCAAATAAAGGCTAAAATATATGAAGCAAAAAACAGACTAAATATTCTTGAAGATTCTATTGATAGAAATATAGTTGGTTGTGGAGAACAGTATTTAGATCAATATCCAGTGAAAGAAGATGGCTGGAGTTCTGATTGTTCTACTTCAAGCTCTGACATTTCAACTGAGAGTGTTACTTCAAGAGGGAAACTTTTGGACTATATGAATGGTGACAAAGGAACCACAACTTGTCTGAGAAAGGAGTTGTATATGACGTATAATGTGATCCATAAACTATGTCTGCAAATAGATGCGCTTCTAATGCATGATACAGGAGGTGATTCTTTGGCAGAAGAAATGGACCAGGGAAAAACATCCTTCAAACTGAGGATGGAAAAAGCTGAAGCTGGTTGCAATAACACTAGCCAGGTAACTTCTGTTGAGGAGACTAAAGAGGATGGGGGATTCTTGAACAGATTAGAAGAAGCTCAAGAAGCAATAAGAGAAGCTGATATTATGTTAAATGCATTGTTGAGAGCCAATGAAAATGCAAAGCAACAAACCGGTATATTTAAGCAAGCTGGTGAGCAGTTACAGATAGAAAGAGAAAACTTGATTGACGAAGTTGGACAGCTCAAGTCTTCAATGCATCTGAAGGATGCTGAGAATAAATTACTTCATGAACAAGTTTGTTTTAATTTGGAAGAGGTAGCTAGCTCAGTGTCTTCTCTTGAAGGTTGTATTTCACAAACACAGAGGGATGTGGATGAGAAGTTTGGCATAATATCTTGTGATATCATATCCTTTAGAGACGAGATGCTTAAATCTGTCGGTAACTGGAAATCCCTATTGGAAGATGTTTTCTTGGAAGTAATGGGAAGAGAATTTATGTCATTTGTTGTCCATCAGTGTGTGAACGAAATTTGTTGGCAATTTGCACAGTTTAAGGCAGAACCTAACTTTTTACCACTTAAATGGCAAAGGTGTTTGGAATCAACCAATATTTCAGGATCTACATGCCTTACTGATAAGGAGGATATTATGTTAATCAGTAAGATTGACAGAGGAAGAACTGAGCTAATCACAGGCTTGGAAGAGGCAGATGGAGGTTTTTCCTATGATGACATGTTGTATGAGAATTTGGCACTTAAGAAGGAATTGAAGAGGAAGGAGGTATTATTGGAAGGTTTGCTTTTCGATTTTAGGTTGCTGCAGGAATCAACCTCAAAAACAAAGGATATGAAAAACGAGAGAGATTATTCTCTGAGTCAGCTGCAGCATGAATTGGAGATTAAGGCAAATCAGCTTGACAGTGTGCTAGTTCAGCAAAGAAAACTTGAGGGGCTTCTGACTGATACTGAAAAGGCTTTGTTCTCATCTAATTCCAAGCTTGATAAGGCAAAAGAAACAATGACTTCAATTTCAGAACATAATGCACAGTTGAAGAAGCAGGTAGAAGATCTTTATCTCAAGAAATCTGAGGCTGGAAAACAATTGGCAGAACAGCAGGATGTAATTAATAAACTAGAAAATGAAATAATCCATCTTACTTCACTGGAAAAGAAATCAGTTCTATCAGTTGAAGACATTGAGAATGAATTGAGCAGAGTCATCAGTGAGAGAGACCAACTCCATGAACAAGTCTGCTTTCTGACTGACAAGCTTGGCATAGCCTATGCATTGGCTGATGAAAAGGAAGCTGTGGCCACTGAAGCTCGTCAGGAATCTGAGGCCAGTAAATTGTACGCAGAACAAAAGGAAGAGGAGGTGAAGATCTTGGAACACTCTGTTGAGGAGCTTGAGAGTACCATAAATATGTTGGAGACAAAGGTGCATGAGATGGATGAGGAGGTTGAGAAAAACCGCACATTAAGAGAATCATTAGAACTGGAGAAACAAATCTTCAGACAGAGACTATTAGCTGTACAAAGTCTCTCTGAAGATGTGGATTGTGGAGATGAAATTGTTGAGCATGCTCAAGAGCAACCCAGGCAAGCGGGAATTATAGTTCTAGAACTGCTGGAGACCCGGAGTAGAATAAAACTTCTTGAAGAGGAAAGGGTAGAACAAGACAAAGAGGTCAAACGACTCAAAGAATACATCTCCGAGCTTGTATTACATGCTGATGCCCAGGCAATGAAGTACCAACAAAAATACACAAATCTGGAAGTAATGGTCCGCGATGCAAGCAAAGATCATTCAAATCCAATGACTGCACCAACGTTAGATAAAGTCGAAAAGAATTCTGCGAGACCGAGGGGTTCAAGCTCACCATTCAGATGCATTTCAAACTTGGTGCATCAGATGAACTTGGAGAAAGAGCATGAGCTGTCTACAGCAAGGCTTCGTATAGAGGAGCTTGAGGGACTGTCAACTAGTCGGCAAAAAGAGATATGTATACTGAATGCTAGGCTGGCAGCAGCAGAAAGTATGACGCACGATGTTATTCGAGATTTACTTGGTGTTAAACTGGACTTGACTAAATATGCTAACTTTATAGAACAATACCAAGTTCAGCAAATGGTTATGGAGGCTCATCTACAGTCTCAACAATTCCGGGAAAAGGAACAAGAGGTTCACAACTTGAGGACACAAATTAATGATTTACAGGAGGAACGAGAATGTTACAAATCTGTACTAAGCAAGAAGGAAGCTGAAGCACTCGCGACACAAATAGCTTGCGAGAAACTACGAGAGCGGGATCACTTGCTTTCTGTACAAAATGGGATACTGAAGATGGAAAACAAAAATCTAAAGAGGAAGATCGTTGAGCTGGATGGAAAGGCAAACACACTTCATCAAACACGAATCAGCCAACAGGAAAATCGTCATACATTTCTAACCAAGAATGATGAGTTAACTAAGAGGTTGGCTAACTCAAAAATGCTTCTCTCCCGCGTGAATGATGAAATCGCTCGTTACCGTATTCCTAGTGGTAGTTCTTCACATCACCGAAGTGGAGGCTCTGGAAACGAGATATCTCACGAACCACTAGAACGAGGGACTGAGGGCTTGGTTTGGTTGATGCATATAGTCAGTATCAAGGATGGTACCACGTTTGTAAATGGTAGTTTGAAGTTCCACGTCCTGTTTGTAAGTTTGTCCCTAATGTTCTTCTACAGCTGCGAGGTCAGGCCAACTGAGCTTTAA 6051 39.66 MHVATMALQELPVDVPHFDLEEDPSFWKDHNVQVMIRIRPLSTTERDSQGYGRCLRQETAKTLVWLGHPETRFTFDHIACETISQTGSGKTYTMMGGIYEVEGKLNEDCGLTLRIFEHLFTRIGMEEKSKQDVKLKYSCKCSFLEIYNEQITDLLEPSSTNLQLREDLKKGVYVENLTEHSVTTINDVVKLLLQGAANRKMAATYMNSESSRSHSVFTCIIESHWEKDSRTHFRFASSANETLSTLKFAQRAKQIQNNAKVNECASGDETALQRQILHLKGQLSFLLKHSNFPRSILNSVPRLEESGVSALFEGYDALGGRMQTENRKMKLMEASLIGALRREEVANATIKKLEFEIEHMKCLAFQQEEDGQRTKMLLKFREEKIRQLELFLGGMLSADQYLLEENKALAVEIKMLQAKINRNPELTRVSFENSKLTEQLQVYQNFYELGEREVLLTEVSELRNELLMALGKNSTISEQDKYQDETMSIKSYTQDDTLSYITGSDENFENTIGQGSDNELGAKPICSQKDLIDAKMLAQSMDSDNTMQAENHGCKQFKHCMVENFLNKSNVTKCQNEGNVMNQHEDVDNKTLQVKLENLTRELEEVRLSNIQYQENQNQQNQSEDVRQQVEMETANTILQLQEEVETLQLELNDRLHGLAQENTRLKDLLSAKHEEMRMLCIDWETAMVELTNFLLDGSKSIRDAHGQIESIANLFPKVNVGISEQVQQAIKVCIEKEETILLLHKSLEDARLMVKEMELKLDSLKEATLALNESQQMDDNISAAGAKPLSTQMTDENIMVEFLGKRLGVKNDQLSEAEKSADAAVIAVEWSSQPQELACCYNIEREMPISKLDVSSQRSSHIFDDVMANVNELLLEESDTESNMIWLGLAELKNITSGHYADMEMHISALHIYIQNLYSEYQDLVQDMVSEIHELRLKAKTSNENCKSLQFFKDKDQPAHKYWNVENQNSILDQIKAKIYEAKNRLNILEDSIDRNIVGCGEQYLDQYPVKEDGWSSDCSTSSSDISTESVTSRGKLLDYMNGDKGTTTCLRKELYMTYNVIHKLCLQIDALLMHDTGGDSLAEEMDQGKTSFKLRMEKAEAGCNNTSQVTSVEETKEDGGFLNRLEEAQEAIREADIMLNALLRANENAKQQTGIFKQAGEQLQIERENLIDEVGQLKSSMHLKDAENKLLHEQVCFNLEEVASSVSSLEGCISQTQRDVDEKFGIISCDIISFRDEMLKSVGNWKSLLEDVFLEVMGREFMSFVVHQCVNEICWQFAQFKAEPNFLPLKWQRCLESTNISGSTCLTDKEDIMLISKIDRGRTELITGLEEADGGFSYDDMLYENLALKKELKRKEVLLEGLLFDFRLLQESTSKTKDMKNERDYSLSQLQHELEIKANQLDSVLVQQRKLEGLLTDTEKALFSSNSKLDKAKETMTSISEHNAQLKKQVEDLYLKKSEAGKQLAEQQDVINKLENEIIHLTSLEKKSVLSVEDIENELSRVISERDQLHEQVCFLTDKLGIAYALADEKEAVATEARQESEASKLYAEQKEEEVKILEHSVEELESTINMLETKVHEMDEEVEKNRTLRESLELEKQIFRQRLLAVQSLSEDVDCGDEIVEHAQEQPRQAGIIVLELLETRSRIKLLEEERVEQDKEVKRLKEYISELVLHADAQAMKYQQKYTNLEVMVRDASKDHSNPMTAPTLDKVEKNSARPRGSSSPFRCISNLVHQMNLEKEHELSTARLRIEELEGLSTSRQKEICILNARLAAAESMTHDVIRDLLGVKLDLTKYANFIEQYQVQQMVMEAHLQSQQFREKEQEVHNLRTQINDLQEERECYKSVLSKKEAEALATQIACEKLRERDHLLSVQNGILKMENKNLKRKIVELDGKANTLHQTRISQQENRHTFLTKNDELTKRLANSKMLLSRVNDEIARYRIPSGSSSHHRSGGSGNEISHEPLERGTEGLVWLMHIVSIKDGTTFVNGSLKFHVLFVSLSLMFFYSCEVRPTEL 2016
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4643385 4658423 - CmPI595203_06g004060.1 Cmu06g0406 418066

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0406 2016 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 286 IPR027417 -
Cmu06g0406 2016 ProSiteProfiles Kinesin motor domain profile. 85 248 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cmu06g0406 2016 Coils Coil 1494 1514 - -
Cmu06g0406 2016 Coils Coil 1431 1486 - -
Cmu06g0406 2016 Coils Coil 1127 1154 - -
Cmu06g0406 2016 MobiDBLite consensus disorder prediction 1698 1723 - -
Cmu06g0406 2016 Coils Coil 1917 1937 - -
Cmu06g0406 2016 Gene3D Kinesin motor domain 24 235 IPR036961 -
Cmu06g0406 2016 PRINTS Kinesin heavy chain signature 75 96 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cmu06g0406 2016 PRINTS Kinesin heavy chain signature 204 221 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cmu06g0406 2016 Gene3D Kinesin motor domain 236 291 IPR036961 -
Cmu06g0406 2016 Coils Coil 1737 1757 - -
Cmu06g0406 2016 Coils Coil 1819 1867 - -
Cmu06g0406 2016 Coils Coil 1640 1667 - -
Cmu06g0406 2016 Coils Coil 973 993 - -
Cmu06g0406 2016 Coils Coil 1882 1902 - -
Cmu06g0406 2016 PANTHER KINESIN-LIKE PROTEIN KIN-12D 517 1952 IPR044986 GO:0000910(PANTHER)
Cmu06g0406 2016 Coils Coil 582 651 - -
Cmu06g0406 2016 Pfam Kinesin motor domain 85 230 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cmu06g0406 2016 Coils Coil 748 775 - -
Cmu06g0406 2016 MobiDBLite consensus disorder prediction 1943 1963 - -
Cmu06g0406 2016 Coils Coil 1550 1598 - -
Cmu06g0406 2016 SMART kinesin_4 29 263 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0406 K10400 - - csv:101204935 2900.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0406 Cmu-Chr6:4643385 Cmu09g1695 Cmu-Chr9:32842411 7.00E-206 dispersed
Cmu06g0406 Cmu-Chr6:4643385 Cmu03g0804 Cmu-Chr3:2300883 5.60E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g244 Blo01g00025 . . . . . . Bma05g00987 . . . . Car06g01297 . . Cpe08g00117 . . . . . . . . Cla06g00398 Cam06g0419 Cec06g0427 Cco06g0427 Clacu06g0406 Cmu06g0406 Cre06g1185 . Cone15ag0698 . . . . . . . Blo07g00066 Bda11g00439 . Bpe05g00795 Bpe13g00757 . Bma06g01400 . . . . . . . Cpe12g00346 . Bhi12g01988 . . . . . Lcy12g0897 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012899 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 28