Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu06g0411 | ATGGTAGCTGAAGCTGAGATCAAATGCCCCAAAACCGTTCCTCTCGTGAAAATCAACTATCATCTTTGCGTAACCGATGATCGCGATCTTGAGATCCATTTGCCGCACCCTTCTTCCTCACCTGTTTTTCCCGAGGCAGTTAGTTGTTCAGATATTGTTGAAGATGTGCATATAAAATCAACTGCCATAGGTTTTGTTCCAAACATTCGATCTGGTAGCTATGCAGACATTGGAGCTCGAGATTCTATGGATGATGAACATGTCTGCATTGATGACCTGTCTGCCCACGTTAGATCTATGTTCAAATGTTCTATGCCTAATGGTTTCTATGCTGTTTTTGATGGTCATGGAGGGCCTCATGCAGCTGCTTTTGTCAAGAGGAATGCCATGAGATTATTCTTTGAAGATGCCGATTGGTTAAAAATGCAGGACATTGATTCTATTTCTTTGAAAGATTTGGAGAACTCTCATCGCAAAGCATTTCAATTGGCAGATCTTGCCTTGGCTGATGAGCAAAGTGTTAGCAGCTCGTGCGGGACAACTGCGTTGACTGCGTTGGTCCTTGGGAGGCATTTGCTTGTTGCAAATGCCGGTGATTGCCGAGCAGTCCTATGTAGGAAAGGTGTAGCAGTCCCAATGTCTGAAGATCACAGGCCTTCTAATTTACTTGAGCTCAAGCGAGTGGAAGGGATGGGTGGTTTCGTAGATGATGGATATGTTAATGGCTATATTTCAGTAACCAGGACCTTGGGGGATTGGGATCTGAAATTGCTAAATGGCTCCTCATCACCTCTCATTGCTGAGCCACAAGTGGAGCATGTTATTTTAACAGGCGATGATGAGTTCTTGATTCTCGGCTGTGATGGGATTTGGGACGTAATGTCAAGCCAATATGCTGTCAGTCTCGTTCGACGTGGGTTGAGGAAGCACAATGACCCTCATCAAAGTTCCCGAGAATTAGTCCAGGAAGCTTTGCGCCTCAACACATCAGATAATCTTACTGCAATTGTAATCTGCTTTTCTTCTCCGAATTGCGTTCCCCAGCAGCGAATATGCAAGTCGTGTAATCTGACCGAAGAGGCTACAAATAGATTGAGGAGCTTGTTAGAAGGTAACTGA | 1119 | 44.59 | MVAEAEIKCPKTVPLVKINYHLCVTDDRDLEIHLPHPSSSPVFPEAVSCSDIVEDVHIKSTAIGFVPNIRSGSYADIGARDSMDDEHVCIDDLSAHVRSMFKCSMPNGFYAVFDGHGGPHAAAFVKRNAMRLFFEDADWLKMQDIDSISLKDLENSHRKAFQLADLALADEQSVSSSCGTTALTALVLGRHLLVANAGDCRAVLCRKGVAVPMSEDHRPSNLLELKRVEGMGGFVDDGYVNGYISVTRTLGDWDLKLLNGSSSPLIAEPQVEHVILTGDDEFLILGCDGIWDVMSSQYAVSLVRRGLRKHNDPHQSSRELVQEALRLNTSDNLTAIVICFSSPNCVPQQRICKSCNLTEEATNRLRSLLEGN | 372 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 4711647 | 4715951 | + | CmPI595203_06g004110.1 | Cmu06g0411 | 418071 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu06g0411 | 372 | PANTHER | PROTEIN PHOSPHATASE 2C | 60 | 340 | IPR015655 | GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro) | |
Cmu06g0411 | 372 | Pfam | Protein phosphatase 2C | 78 | 332 | IPR001932 | - | |
Cmu06g0411 | 372 | CDD | PP2Cc | 69 | 340 | IPR001932 | - | |
Cmu06g0411 | 372 | SUPERFAMILY | PP2C-like | 59 | 342 | IPR036457 | - | |
Cmu06g0411 | 372 | Gene3D | - | 52 | 344 | IPR036457 | - | |
Cmu06g0411 | 372 | SMART | PP2C_4 | 60 | 338 | IPR001932 | - | |
Cmu06g0411 | 372 | ProSiteProfiles | PPM-type phosphatase domain profile. | 70 | 340 | IPR001932 | - | |
Cmu06g0411 | 372 | FunFam | Probable protein phosphatase 2C 22 | 53 | 343 | - | - | |
Cmu06g0411 | 372 | ProSitePatterns | PPM-type phosphatase domain signature. | 109 | 117 | IPR000222 | GO:0043169(InterPro) | |
Cmu06g0411 | 372 | SMART | PP2C_SIG_2 | 85 | 340 | IPR001932 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu06g0411 | Cmu-Chr6:4711647 | Cmu11g1871 | Cmu-Chr11:30827571 | 4.40E-82 | dispersed | |
Cmu06g0411 | Cmu-Chr6:4711647 | Cmu09g0464 | Cmu-Chr9:4310254 | 2.40E-104 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6348 | PF00481 | PP2C | 1.70E-64 | CL0238 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu06g0411 | K14803 | - | csv:101207477 | 691.804 |