Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0425 ATGCTACCATCCTTTATTACTTTGGCGATTTGGTTCCAATTTTGCATTAAAATCGACCCAATTCGACCTGCATACATCGCTAGTGACAATATAGGTGCTGGAGCCTTAGTTACAAATCTAATCTTCTATGCTTGCACAAAAACACGAATCACGTCTTCAATGCTCGCACAAAACATATTGAGATTGACATGCACTTTGTACGTGACAAGGAGCAAGACTCACTGTCCTCAAGAGGACTGCACAAATTTGGGTATTCGATTTCTCACTTCCGCAAAGCTGGAGAGGCACAGAGGAGACCGCTATGGCCCCGACCAAGATTCCCACCCTTATCGTCACTCTGCAGCTCCTTCTCGCTTCTCGGACTCCCCCGTGAACCATCACGACACTCGTCGGAGCCCCAGTAACTTCCGCGGCGGCGTTGCTGGAGCTAACCGTCGCCCTTTCGACAGCCCGCCTCGTTACTCTACTCCCGCTGCTGCTGGTTTTCGCCCCATGGGAACTGGTGGGGGGTTCCGTCCAATTCCTGGTCCTGGGGGTGGTGGTTTTGGGTCCAGTTTCCAGCCGCCACCTGTTGCAGGACAGAAACGAGGTTACCCTTTTGCCGGCCGTGGAAGTTCTCCAGATCACTCCGATGGAAGCAATTTTGCCAAGCTATTTGTTGGATCCGTTCCAAGGACAGCCACAGAAGAAATTATTCGCCCGTTGTTTGAAGAACATGGAAATGTGATTGAAGTAGCTTTGATAAAGGATAAGAGAACAGGCCAGCAACAAGGATGTTGTTTTGTAAAATATACTACCTCAGAAGAAGCTGATAGAGCAATTAGGAACTTGCACAATCAACATACCCTTCCTGGGGGAGCGGGCCCAATTCAAGTTAGATATGCTGATGGAGAGCGAGAGCGCCTTGGTGCAGTTGAGTACAAATTGTTTGTTGGTTCACTAAATAAACAAGCTTCAGAAAAAGAAGTCAAGGAAATTTTTTCTCCCTATGGAGTAGTTGAAGATGTTTACCTTATGCGGGATGAAATGAAACAGAGTCGTGGGTGTGGATTTGTGAAGTATTCACATAGGGATATGGCACTGGCGGCTATAAATGCTCTCAATGGAATCTTTACAATGAGAGGCTGTGATCAACCGTTAAGTGTCCGCTTTGCTGACCCAAAGAAGCCTAGATCTGGAGATTCAAGGGGCCCTCCTGCATTTGGAGGTCCAGGTTTTGGTTCTCGCTTTCAAGCACCTGGGCCAAGACCAATGCCTAATTTTGGTGAATTTATGGGTGATCAAATTCCAATTGATGTACGAGGTTTCAGGCCACCTGTAGATGCTGGTATTCATCCCTTCGGGGGTCAGTTACCTCCTAGGTCGAGTGAAATGGGACCACCTTTGAATTTGGGTGGTCCTGCTAGTGGGTTTAGAGGTCCCAATCAAGGGTTAGTCAATCCAGCATCCTCAGCTTCTCAACAGTCTGCAAGCCAACATCCACAGCATGGCTTGCAAGCGTCGCCAGTGTTAAAGGCAGTTCAGTCACCGAAACAATTGCCACCTTCCAGTCAATTGCACCCTCATGCTCCTTCCTATTCTCAGACACATACATCTGCAGTACTAGCACAGCAGCATAATCAACCACAAAACTTCAATTCTTCTGGTCAATTGCCCTTTAGTCAACCTGCACCTTCCCATGAGTCTTCTGGCTTGGGTGCACAGTTGCCGCTATCTCAGGCTATGGTCCAGCAGGGTGCCTCATCTGCTGCAGTGACACATACTCCTTTGAGCATGAACTTACAATCCCATGGTGCTGCTCCTAATCAACAGCAGCTTCCTACTCCAATTCAGCCACGTCAGAATTCACCTTCCCAGTTAGCACACATGCTGTCACAACAAAAACAAACTCTACAGGCTACTTTTCAGACATCCCAGCAGGCATTCTCTCAGCTACAGCAGCTGATGCAACCATCAAATCAAAGTTCAACATTGCAGCCGAGTTCCCAGACTATTAAGCAGCAGTCTCACTGGGCAGGGGCTGTGCCACATACAACTGCCAATGCCGCTTCTGCACCTTCAGATGAACATACATCTACAGTTCCTCCTGTAGCTATAAATACCCAAGCTGTAGCTCCTGTAAAATGCAATTGGACAGAGCACACTTCTCCTGATGGTTATAAATACTATTATAACAGTGTTACTGGTGAGAGCAAGTGGGAGAGACCTGAAGAGCTTTCAGTGATCGAGCAACAACAAAAGCCACGGGTACTCCAGCCTCATAACCAGCCACATCCTCAACTGCTATCTACTCCGCAACTCTCTCAAACTCCCCAGCCCCAGCTTCAATCTCAGTTCCAGACACAGATGCCCCACCCTCAGCCGCTACAGCAACCTTCATTCCATTCACAGGAAGGTGTTTATACACAATTGCAGCCAGCCAATAGCTCGGTAAATGATCCTACTCGCTTCCACCAGGGATTTCAGGCGACTCAAGATTCCAAGGCAGAGAAGAATAGCTTTGTAAGTTTACACCGTCGAACCGTAGAGAACATTTAA 2538 47.83 MLPSFITLAIWFQFCIKIDPIRPAYIASDNIGAGALVTNLIFYACTKTRITSSMLAQNILRLTCTLYVTRSKTHCPQEDCTNLGIRFLTSAKLERHRGDRYGPDQDSHPYRHSAAPSRFSDSPVNHHDTRRSPSNFRGGVAGANRRPFDSPPRYSTPAAAGFRPMGTGGGFRPIPGPGGGGFGSSFQPPPVAGQKRGYPFAGRGSSPDHSDGSNFAKLFVGSVPRTATEEIIRPLFEEHGNVIEVALIKDKRTGQQQGCCFVKYTTSEEADRAIRNLHNQHTLPGGAGPIQVRYADGERERLGAVEYKLFVGSLNKQASEKEVKEIFSPYGVVEDVYLMRDEMKQSRGCGFVKYSHRDMALAAINALNGIFTMRGCDQPLSVRFADPKKPRSGDSRGPPAFGGPGFGSRFQAPGPRPMPNFGEFMGDQIPIDVRGFRPPVDAGIHPFGGQLPPRSSEMGPPLNLGGPASGFRGPNQGLVNPASSASQQSASQHPQHGLQASPVLKAVQSPKQLPPSSQLHPHAPSYSQTHTSAVLAQQHNQPQNFNSSGQLPFSQPAPSHESSGLGAQLPLSQAMVQQGASSAAVTHTPLSMNLQSHGAAPNQQQLPTPIQPRQNSPSQLAHMLSQQKQTLQATFQTSQQAFSQLQQLMQPSNQSSTLQPSSQTIKQQSHWAGAVPHTTANAASAPSDEHTSTVPPVAINTQAVAPVKCNWTEHTSPDGYKYYYNSVTGESKWERPEELSVIEQQQKPRVLQPHNQPHPQLLSTPQLSQTPQPQLQSQFQTQMPHPQPLQQPSFHSQEGVYTQLQPANSSVNDPTRFHQGFQATQDSKAEKNSFVSLHRRTVENI 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4836104 4851021 + CmPI595203_06g004250.1 Cmu06g0425 418085

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0425 845 ProSiteProfiles WW/rsp5/WWP domain profile. 705 738 IPR001202 GO:0005515(InterPro)
Cmu06g0425 845 SMART rrm1_1 308 383 IPR000504 GO:0003723(InterPro)
Cmu06g0425 845 SMART rrm1_1 217 293 IPR000504 GO:0003723(InterPro)
Cmu06g0425 845 MobiDBLite consensus disorder prediction 510 565 - -
Cmu06g0425 845 MobiDBLite consensus disorder prediction 382 565 - -
Cmu06g0425 845 Gene3D - 303 394 IPR012677 -
Cmu06g0425 845 Pfam RNA recognition motif 218 280 IPR000504 GO:0003723(InterPro)
Cmu06g0425 845 Pfam RNA recognition motif 309 373 IPR000504 GO:0003723(InterPro)
Cmu06g0425 845 Gene3D - 204 302 IPR012677 -
Cmu06g0425 845 FunFam flowering time control protein FCA isoform X2 210 302 - -
Cmu06g0425 845 PANTHER TRANSFORMER-2-RELATED 306 399 - -
Cmu06g0425 845 FunFam Flowering time control protein FCA 303 393 - -
Cmu06g0425 845 SUPERFAMILY WW domain 702 738 IPR036020 GO:0005515(InterPro)
Cmu06g0425 845 Pfam WW domain 709 736 IPR001202 GO:0005515(InterPro)
Cmu06g0425 845 MobiDBLite consensus disorder prediction 648 672 - -
Cmu06g0425 845 MobiDBLite consensus disorder prediction 752 831 - -
Cmu06g0425 845 MobiDBLite consensus disorder prediction 476 498 - -
Cmu06g0425 845 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 387 IPR000504 GO:0003723(InterPro)
Cmu06g0425 845 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 297 IPR000504 GO:0003723(InterPro)
Cmu06g0425 845 SUPERFAMILY RNA-binding domain, RBD 307 412 IPR035979 GO:0003676(InterPro)
Cmu06g0425 845 SMART ww_5 706 738 IPR001202 GO:0005515(InterPro)
Cmu06g0425 845 MobiDBLite consensus disorder prediction 593 627 - -
Cmu06g0425 845 Gene3D - 707 749 - -
Cmu06g0425 845 MobiDBLite consensus disorder prediction 96 213 - -
Cmu06g0425 845 MobiDBLite consensus disorder prediction 752 832 - -
Cmu06g0425 845 SUPERFAMILY RNA-binding domain, RBD 199 301 IPR035979 GO:0003676(InterPro)
Cmu06g0425 845 CDD WW 708 738 IPR001202 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0425 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0332 Cmu-Chr5:2816614 Cmu06g0425 Cmu-Chr6:4836104 1.00E-12 dispersed
Cmu06g0425 Cmu-Chr6:4836104 Cmu01g0399 Cmu-Chr1:4171395 5.80E-13 dispersed
Cmu09g0618 Cmu-Chr9:5659044 Cmu06g0425 Cmu-Chr6:4836104 3.00E-41 transposed
Cmu10g1931 Cmu-Chr10:24787885 Cmu06g0425 Cmu-Chr6:4836104 2.90E-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g46 Blo01g00037 Blo12g00030 Bda03g01189 . Bpe04g01123 . Bma04g01118 Bma05g01000 . Cmo17g00369 . . . . . . . . . . . . . . Cla06g00417 Cam06g0439 Cec06g0445 Cco06g0444 Clacu06g0426 Cmu06g0425 Cre06g1204 . Cone15ag0721 . . . Csa06g01860 . . . . . . . . . . . . . . Cma17g00380 . Car17g00351 Cpe12g00332 Cpe17g00076 Bhi12g01943 . . . . . Lcy12g0865 . . . . . . . Lsi09g01506 . . Cme11g02092
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007086 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 37