Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0427 ATGGAGGAGGAGAAGAAGAAGGAAGAAGTTTTGAGAAATAGAGATCAGATGGGAAATTCTGGATTGTTATTCTCCGATGCGATTATTCCCAATAATAATAATATGTTCGATTTTCCATTCATCGACTCCACTGATTCTTCTTCTTCTTCTTCTTTTAAGCCTTCCACTTTCTTGGATTTGTTAGCCACCCAAGATTACACCCCTTCTTTATTCGATCTTTTCTCTCCTCCGCCGCCGCCTCCTCCTCCTCCTCCTCCACCACCCCCCTCCTCCGCCGTGCCTGAGTCATCCGAAGTCCTCAATACTCCTCCCACTCCTAACTCCTCCTCCGTCTCTTGCTCCTCCACCGAACGCCTTCTCGACGCCGATGATGCCGATCGGGATAAATCGCCTTTCAACAAACAGTTGAAAGCAAAAAAGAAAAATCAAAAAAGGGGAAGAGAACCGAGATTTGCGTTCATGACAAAGAGCGAAGTGGATCATCTAGACGACGGTTACAGATGGCGAAAATACGGTCAAAAAGCCGTTAAAAACAGCCCTTATCCAAGAAGTTATTACCGTTGCACCACCGCCGGCTGCGGCGTCAAAAAACGAGTCGAACGATCCTCGGACGACCCTTCCGTCGTCGTCACCACTTACGAAGGCCAACACACTCATCAAAGTCCAATCATGCCACGTGGAGCTACATCAGCCGGCGCCGCCGCCTTCGCCTCACCCCAACCGCCGCTTGTTTTCCCACAGCCGCAATTATTCCGAAACCACCATCAGCAATATACGTACGCTCCGGCGCCGCCTGTGGACGTTGTCACGTGCGGCCGAGTGTTTGATCCCGTGTTTCATAGTTTTGGTGGTGATGAACGTCGTCGTATTGATGGAATAACTTGTTCTAATTCTGATTCTTTCCAAGACCATGGCCTTCTACAAGATATGATCGTACCCTCCTCCAACTCCTTACAAATCCCAGAAGAAGATAAACAAAATTAA 984 48.37 MEEEKKKEEVLRNRDQMGNSGLLFSDAIIPNNNNMFDFPFIDSTDSSSSSSFKPSTFLDLLATQDYTPSLFDLFSPPPPPPPPPPPPPPSSAVPESSEVLNTPPTPNSSSVSCSSTERLLDADDADRDKSPFNKQLKAKKKNQKRGREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSVVVTTYEGQHTHQSPIMPRGATSAGAAAFASPQPPLVFPQPQLFRNHHQQYTYAPAPPVDVVTCGRVFDPVFHSFGGDERRRIDGITCSNSDSFQDHGLLQDMIVPSSNSLQIPEEDKQN 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4857912 4859332 - CmPI595203_06g004270.1 Cmu06g0427 418087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0427 327 MobiDBLite consensus disorder prediction 1 26 - -
Cmu06g0427 327 SUPERFAMILY WRKY DNA-binding domain 154 222 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu06g0427 327 MobiDBLite consensus disorder prediction 94 117 - -
Cmu06g0427 327 MobiDBLite consensus disorder prediction 35 54 - -
Cmu06g0427 327 Gene3D WRKY domain 146 223 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu06g0427 327 FunFam WRKY transcription factor 57 148 222 - -
Cmu06g0427 327 MobiDBLite consensus disorder prediction 68 150 - -
Cmu06g0427 327 SMART WRKY_cls 162 221 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu06g0427 327 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 99 230 IPR044810 GO:0003700(InterPro)
Cmu06g0427 327 MobiDBLite consensus disorder prediction 72 93 - -
Cmu06g0427 327 ProSiteProfiles WRKY domain profile. 157 222 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu06g0427 327 Pfam WRKY DNA -binding domain 163 220 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu06g0427 327 MobiDBLite consensus disorder prediction 119 135 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1831 Cmu-Chr2:32237261 Cmu06g0427 Cmu-Chr6:4857912 1.30E-39 dispersed
Cmu06g0427 Cmu-Chr6:4857912 Cmu09g2145 Cmu-Chr9:37534896 5.00E-37 dispersed
Cmu08g0971 Cmu-Chr8:22005159 Cmu06g0427 Cmu-Chr6:4857912 5.60E-40 transposed
Cmu05g1427 Cmu-Chr5:18865943 Cmu06g0427 Cmu-Chr6:4857912 1.20E-29 transposed
Cmu10g1929 Cmu-Chr10:24780120 Cmu06g0427 Cmu-Chr6:4857912 1.10E-43 wgd
Cmu05g0738 Cmu-Chr5:6410926 Cmu06g0427 Cmu-Chr6:4857912 7.20E-42 wgd
Cmu06g0427 Cmu-Chr6:4857912 Cmu09g0478 Cmu-Chr9:4466641 1.70E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6349 PF03106 WRKY 6.40E-27 CL0274 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0427 - - - 0.0