Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0431 ATGCTCCGGGGATTCATGAATCTGCTCTCTCTTTGCTGGAAGCCTTTCGGGCGTCCTACTGATGATTTCACCTCTGGTGGTGTTATTGGGACCAATTGTGGTGCTAAAGACACCAAGGATAGCTTGCTTTGGTTCTATGATTATGGTAAGTATGCTTCCGGTGAATTCTCCATGGCTGTTGTTCAAGCCAACCAAGTTCTTGAGGACCAGAGCCAAATTGAATCTGGCCCTTTTGGTACTTTCGTCGGAATCTACGATGGTCATGGTGGTCCTGACGCTGCTCGTTACGTCTGTGATAACTTGTTTAGACGTTTCCAAGATGAGCAACGAGGAGTTGTGACTCGTGAAACCATTCTGAATGCTTTTCGTCGAACGGAGGAAGGGTTCACGGCTGTTGTGTCAGAGTTGTGGAATACTCGACCCCAGATAGCAACAGTTGGGACATGCTGTCTAGTAGGGGTGATACACGAGCAGACACTCTACATTGCGAGTCTAGGAGATTCTCGTGCTGTGTTAGGGAAGAAAGTTGGCAACACTGGGGAGATTGCTGCCATTCAATTATCGACCGAGCATAATGCAAATCTTGAGGAAATCAGGGAAGAATTAAGCGCCATGCATCATGATGATCCTCAAATCGTGGTTCAAAGGCATGGAGTTTGGAGAGTGAAAGGAATTATACAGGTTTCTAGATCCATTGGGGATGTCTATTTGAAACATGCTCAGTATAATAATGAAAGAATCAATGCTAAATTTAGGCTTCCTGAACCAATTGACAGGCCTATATTGACTGCTGTACCTACGATTATTGCTCACCCTCTTCATCAAAACGATTCTTTTCTCATATTTGCATCCGATGGACTTTGGGAACACCTAACCAATGAAAAAGCAGTGGAGATTGTCCATAATCATCCACGTGCAGGAAGTGCAAAAAGGCTTGTGAAGGCAGCCCTTCAAGAAGCAGCTCGAAAACGAGAGATGCGGTATTCGGATCTCCGAAAGATCGACAAGAAGGTTCGGCGTCATTTTCATGATGACATTAGTGTTATTGTTTTATTTTTCAACCACGATCTTATATCCAGAAGCAATGTCCTCCTAGATCAACCATTATCAGTAAGAAGTGCTTTTGACCATTAA 1134 44.09 MLRGFMNLLSLCWKPFGRPTDDFTSGGVIGTNCGAKDTKDSLLWFYDYGKYASGEFSMAVVQANQVLEDQSQIESGPFGTFVGIYDGHGGPDAARYVCDNLFRRFQDEQRGVVTRETILNAFRRTEEGFTAVVSELWNTRPQIATVGTCCLVGVIHEQTLYIASLGDSRAVLGKKVGNTGEIAAIQLSTEHNANLEEIREELSAMHHDDPQIVVQRHGVWRVKGIIQVSRSIGDVYLKHAQYNNERINAKFRLPEPIDRPILTAVPTIIAHPLHQNDSFLIFASDGLWEHLTNEKAVEIVHNHPRAGSAKRLVKAALQEAARKREMRYSDLRKIDKKVRRHFHDDISVIVLFFNHDLISRSNVLLDQPLSVRSAFDH 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4920685 4924134 - CmPI595203_06g004310.1 Cmu06g0431 418091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0431 377 Gene3D - 47 362 IPR036457 -
Cmu06g0431 377 SUPERFAMILY PP2C-like 64 354 IPR036457 -
Cmu06g0431 377 ProSiteProfiles PPM-type phosphatase domain profile. 52 353 IPR001932 -
Cmu06g0431 377 CDD PP2Cc 56 353 IPR001932 -
Cmu06g0431 377 PANTHER PROTEIN PHOSPHATASE 53 352 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cmu06g0431 377 SMART PP2C_4 49 351 IPR001932 -
Cmu06g0431 377 FunFam Probable protein phosphatase 2C 42 46 361 - -
Cmu06g0431 377 Pfam Protein phosphatase 2C 80 320 IPR001932 -
Cmu06g0431 377 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0431 Cmu-Chr6:4920685 Cmu10g0895 Cmu-Chr10:994325 2.10E-116 dispersed
Cmu06g0431 Cmu-Chr6:4920685 Cmu02g1208 Cmu-Chr2:24863102 7.40E-117 transposed
Cmu06g0431 Cmu-Chr6:4920685 Cmu01g2001 Cmu-Chr1:33235040 7.40E-117 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0431 K01102 - csv:101207284 723.391