Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu06g0437 | ATGGGAACTCCACCAGCAGAGGAGCTTCTGAGGAAGATCCAAGAGCTGGAGGAGGGTCAAGCGCATCTCAAGAAAGAGATGTCCAAACTTCTTCTCTCTGGAACTGCCGCCGATTCCAACTCCGACCACCAAATCCACCACCACCATCATCACCATCAACGTTCTCAATCCATTTCACCTCAGCGTTCTAGATTTGCTACGGCTCGGAGAAGAGGTGGCGCTGCTGGAGGTTTAGACGCCGCCGCCGCCGCCGCCGCCGCCTGGAAAAGAGGCTCTTCATCATTTCGACATTCTTCTCCACTTCAGAGAGAAAGTAGGACTCGTGACCCTTTGAATGCCGCCGTCGCCGGAGGTGGCGGCGGCGGCGGCTCTGGCCCCGCCGCTGTGAATTTCACCAACAAACAGTATCTGAATATCTTGCAGTCAATGGGACAGCCTGTTTATATTTTTGACCTTAATTATCATATAATTTACTGGAATCGAGCTGCTGAAATTGTATATGGGTATTCTGCGGCGGAGGCTCTTGGCCAGGACGCCATTGAGCTTCTAGTAGATCCTGAGGATTTCACCATTGCAAACCATGTAATTCTTCGTGTCATGGCGGGTGAGAATTGGACTGGTCACTTACCTGTAAAGAACAAGATGGGGCAAAAATTTATAGTTGTTGCCGCCAACACTCCATTCTACGACGATGGTGCATTGGTTGGGATTATCTGTGTATCGAGCGATTTGCGGCCATTTCAAGATTTGAAGATTCCTCTATCAGTAGGTTCTAAACAGCAGGATGCAGATCCGAGCATGGTCCGATCACGAATCCCAGTTTCAGCTAAGCTTGGTCTTGATCCTCAGCAGCCTCTTCAAGTGGCAATTGCTTCAAAGTTATCCAACTTGGCATCAAAGGTAAGCAACAAAGTCAAGTTGAAAATTCGAACTGGAGAAAACAGTTCGGATCGTGAAGGTGGAAGTGGAGATAGTTATCACTCTGATCTTGGCTATCCAGAGGCAGTTCTTTGTGACCATCGGGACGATGCAAATTCGAGCGGAGCTAGCACGCCTCGAGGAGATTCCACGGCTCATGGTGCATTCTCTCAGGTTGAAGAGAAGTTATCTGGCAAACTGGTCAGGGATTCTGGTGATGAGGTTAAAGGAAAACCTACCATCCAGAAGATCTTATCCTCAAAGGCAGAAGAATGGATTGCCAAGAAAGGCTTATCCTGGCCTTGGAAAGGGACCGAGCAGGAAGGAGGATCTGAAACAAAGGCAGCCCGTTTTGTTTGGCCTTGGTTACAAATTGATCAAGAAGCCGAACCAGCTAATCAAAAGAGTTCCTCTATTTCTGGGAAACCAGAAATGCAGCAAAACGACAGTCATCGAGCAGTCAATAATGAGGCCTCAGGATCGTGGTCGTCGTTCAATGTTAACAGCACTAGCAGTGTCAGTAGCTGTGGAAGTACCAGTAGTAGTGCTGTCAACAAAGTTGACACAGATATAGACTGTTTGGATCATGAAATCTTGTGGGAAGACCTTACCATCGGGGAGCAAATAGGGCAAGGTTCTTGTGGAACTGTCTATCATGCACTGTGGTATGGATCAGATGTTGCCGTCAAAGTGTTCTCCAAACAAGAGTATTCAGATGATGTGATTCTCTCCTTCAAACAGGAGGTATCCCTGATGAAAAAGCTTAGACACCCCAATATTCTTCTCTTTATGGGAGTTGTGACTTCACCTCAGCGTCTCTGCATTGTCACAGAATTCCTTCCACGTGGAAGTTTGTTTCGTTTACTACAGAGGAACACAGGCAAATTAGATTGGAGACGCCGTGTTCATATGGCTTTGGACATTGCGCGAGGCATGAACTATCTTCACCATTGCAATCCACCTATTATTCACCGAGATTTGAAATCATCGAACCTCTTAATCGATAAAAACTGGACTGTGAAGGTTGGAGATTTTGGTCTATCTCGGCTTAAGCATGAGACTTATCTAACAACTAAGACAGGAAAGGGCACGCCTCAATGGATGGCACCTGAAGTTCTTCGTAATGAGCCCTCGGATGAGAAGTCCGACATATACAGTTTTGGAGTCATATTGTGGGAGCTTGCAACTGAGAAGATCCCTTGGGAAAATCTCAATTCGATGCAGGTAATTGGTGCTGTTGGGTTCATGAACCAACGTCTTGAAATCCCCAAGGATGTGGATCCACAATGGGCTTCTATTATTGAGAGCTGCTGGCAAAGCGAACCTTCAAACCGGCCATCATTCCAAGTTCTGATAGAAAAGCTTAGAGAAATGCAGAGGAAGTTTGCTATGCAATTACAGGCAGCTCGTTCTGGTGGAGAGAATAATAATAATAATAACAATAATAATAATAACAATAATAACAACATCCCTCAAAAGGAAACATAA | 2406 | 46.05 | MGTPPAEELLRKIQELEEGQAHLKKEMSKLLLSGTAADSNSDHQIHHHHHHHQRSQSISPQRSRFATARRRGGAAGGLDAAAAAAAAWKRGSSSFRHSSPLQRESRTRDPLNAAVAGGGGGGGSGPAAVNFTNKQYLNILQSMGQPVYIFDLNYHIIYWNRAAEIVYGYSAAEALGQDAIELLVDPEDFTIANHVILRVMAGENWTGHLPVKNKMGQKFIVVAANTPFYDDGALVGIICVSSDLRPFQDLKIPLSVGSKQQDADPSMVRSRIPVSAKLGLDPQQPLQVAIASKLSNLASKVSNKVKLKIRTGENSSDREGGSGDSYHSDLGYPEAVLCDHRDDANSSGASTPRGDSTAHGAFSQVEEKLSGKLVRDSGDEVKGKPTIQKILSSKAEEWIAKKGLSWPWKGTEQEGGSETKAARFVWPWLQIDQEAEPANQKSSSISGKPEMQQNDSHRAVNNEASGSWSSFNVNSTSSVSSCGSTSSSAVNKVDTDIDCLDHEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFKQEVSLMKKLRHPNILLFMGVVTSPQRLCIVTEFLPRGSLFRLLQRNTGKLDWRRRVHMALDIARGMNYLHHCNPPIIHRDLKSSNLLIDKNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDIYSFGVILWELATEKIPWENLNSMQVIGAVGFMNQRLEIPKDVDPQWASIIESCWQSEPSNRPSFQVLIEKLREMQRKFAMQLQAARSGGENNNNNNNNNNNNNNNIPQKET | 801 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 4967122 | 4971727 | - | CmPI595203_06g004370.1 | Cmu06g0437 | 418097 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu06g0437 | 801 | NCBIfam | PAS domain S-box protein | 134 | 244 | IPR000014 | - | |
Cmu06g0437 | 801 | MobiDBLite | consensus disorder prediction | 773 | 801 | - | - | |
Cmu06g0437 | 801 | MobiDBLite | consensus disorder prediction | 369 | 383 | - | - | |
Cmu06g0437 | 801 | FunFam | PAS domain-containing protein tyrosine kinase | 502 | 586 | - | - | |
Cmu06g0437 | 801 | SUPERFAMILY | Protein kinase-like (PK-like) | 492 | 759 | IPR011009 | - | |
Cmu06g0437 | 801 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 60 | 764 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Cmu06g0437 | 801 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 136 | 243 | IPR035965 | - | |
Cmu06g0437 | 801 | MobiDBLite | consensus disorder prediction | 344 | 358 | - | - | |
Cmu06g0437 | 801 | Pfam | Protein tyrosine and serine/threonine kinase | 509 | 761 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu06g0437 | 801 | CDD | STKc_MAP3K-like | 515 | 761 | - | - | |
Cmu06g0437 | 801 | MobiDBLite | consensus disorder prediction | 340 | 383 | - | - | |
Cmu06g0437 | 801 | Gene3D | Transferase(Phosphotransferase) domain 1 | 587 | 801 | - | - | |
Cmu06g0437 | 801 | MobiDBLite | consensus disorder prediction | 35 | 72 | - | - | |
Cmu06g0437 | 801 | CDD | PAS | 143 | 244 | IPR000014 | - | |
Cmu06g0437 | 801 | Gene3D | PAS domain | 144 | 246 | - | - | |
Cmu06g0437 | 801 | ProSiteProfiles | Protein kinase domain profile. | 509 | 769 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu06g0437 | 801 | PRINTS | Tyrosine kinase catalytic domain signature | 732 | 754 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu06g0437 | 801 | PRINTS | Tyrosine kinase catalytic domain signature | 583 | 596 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu06g0437 | 801 | PRINTS | Tyrosine kinase catalytic domain signature | 669 | 679 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu06g0437 | 801 | PRINTS | Tyrosine kinase catalytic domain signature | 688 | 710 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu06g0437 | 801 | PRINTS | Tyrosine kinase catalytic domain signature | 622 | 640 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu06g0437 | 801 | Coils | Coil | 6 | 26 | - | - | |
Cmu06g0437 | 801 | SMART | pas_2 | 134 | 201 | IPR000014 | - | |
Cmu06g0437 | 801 | MobiDBLite | consensus disorder prediction | 435 | 465 | - | - | |
Cmu06g0437 | 801 | SMART | serkin_6 | 509 | 769 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu06g0437 | 801 | ProSiteProfiles | PAS repeat profile. | 132 | 203 | IPR000014 | - | |
Cmu06g0437 | 801 | FunFam | PAS domain-containing protein tyrosine kinase family protein | 587 | 778 | - | - | |
Cmu06g0437 | 801 | MobiDBLite | consensus disorder prediction | 93 | 123 | - | - | |
Cmu06g0437 | 801 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 628 | 640 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu06g0437 | 801 | Gene3D | Phosphorylase Kinase; domain 1 | 502 | 586 | - | - | |
Cmu06g0437 | 801 | MobiDBLite | consensus disorder prediction | 775 | 801 | - | - | |
Cmu06g0437 | 801 | Pfam | PAS fold | 135 | 243 | IPR013767 | GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu06g0437 | Cmu-Chr6:4967122 | Cmu10g2661 | Cmu-Chr10:33407916 | 2.50E-90 | dispersed | |
Cmu06g0437 | Cmu-Chr6:4967122 | Cmu04g1017 | Cmu-Chr4:24758307 | 5.10E-91 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
75595 | PF07714 | PK_Tyr_Ser-Thr | 3.70E-69 | CL0016 | Cmu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu06g0437 | - | - | - | 0.0 |