Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0437 ATGGGAACTCCACCAGCAGAGGAGCTTCTGAGGAAGATCCAAGAGCTGGAGGAGGGTCAAGCGCATCTCAAGAAAGAGATGTCCAAACTTCTTCTCTCTGGAACTGCCGCCGATTCCAACTCCGACCACCAAATCCACCACCACCATCATCACCATCAACGTTCTCAATCCATTTCACCTCAGCGTTCTAGATTTGCTACGGCTCGGAGAAGAGGTGGCGCTGCTGGAGGTTTAGACGCCGCCGCCGCCGCCGCCGCCGCCTGGAAAAGAGGCTCTTCATCATTTCGACATTCTTCTCCACTTCAGAGAGAAAGTAGGACTCGTGACCCTTTGAATGCCGCCGTCGCCGGAGGTGGCGGCGGCGGCGGCTCTGGCCCCGCCGCTGTGAATTTCACCAACAAACAGTATCTGAATATCTTGCAGTCAATGGGACAGCCTGTTTATATTTTTGACCTTAATTATCATATAATTTACTGGAATCGAGCTGCTGAAATTGTATATGGGTATTCTGCGGCGGAGGCTCTTGGCCAGGACGCCATTGAGCTTCTAGTAGATCCTGAGGATTTCACCATTGCAAACCATGTAATTCTTCGTGTCATGGCGGGTGAGAATTGGACTGGTCACTTACCTGTAAAGAACAAGATGGGGCAAAAATTTATAGTTGTTGCCGCCAACACTCCATTCTACGACGATGGTGCATTGGTTGGGATTATCTGTGTATCGAGCGATTTGCGGCCATTTCAAGATTTGAAGATTCCTCTATCAGTAGGTTCTAAACAGCAGGATGCAGATCCGAGCATGGTCCGATCACGAATCCCAGTTTCAGCTAAGCTTGGTCTTGATCCTCAGCAGCCTCTTCAAGTGGCAATTGCTTCAAAGTTATCCAACTTGGCATCAAAGGTAAGCAACAAAGTCAAGTTGAAAATTCGAACTGGAGAAAACAGTTCGGATCGTGAAGGTGGAAGTGGAGATAGTTATCACTCTGATCTTGGCTATCCAGAGGCAGTTCTTTGTGACCATCGGGACGATGCAAATTCGAGCGGAGCTAGCACGCCTCGAGGAGATTCCACGGCTCATGGTGCATTCTCTCAGGTTGAAGAGAAGTTATCTGGCAAACTGGTCAGGGATTCTGGTGATGAGGTTAAAGGAAAACCTACCATCCAGAAGATCTTATCCTCAAAGGCAGAAGAATGGATTGCCAAGAAAGGCTTATCCTGGCCTTGGAAAGGGACCGAGCAGGAAGGAGGATCTGAAACAAAGGCAGCCCGTTTTGTTTGGCCTTGGTTACAAATTGATCAAGAAGCCGAACCAGCTAATCAAAAGAGTTCCTCTATTTCTGGGAAACCAGAAATGCAGCAAAACGACAGTCATCGAGCAGTCAATAATGAGGCCTCAGGATCGTGGTCGTCGTTCAATGTTAACAGCACTAGCAGTGTCAGTAGCTGTGGAAGTACCAGTAGTAGTGCTGTCAACAAAGTTGACACAGATATAGACTGTTTGGATCATGAAATCTTGTGGGAAGACCTTACCATCGGGGAGCAAATAGGGCAAGGTTCTTGTGGAACTGTCTATCATGCACTGTGGTATGGATCAGATGTTGCCGTCAAAGTGTTCTCCAAACAAGAGTATTCAGATGATGTGATTCTCTCCTTCAAACAGGAGGTATCCCTGATGAAAAAGCTTAGACACCCCAATATTCTTCTCTTTATGGGAGTTGTGACTTCACCTCAGCGTCTCTGCATTGTCACAGAATTCCTTCCACGTGGAAGTTTGTTTCGTTTACTACAGAGGAACACAGGCAAATTAGATTGGAGACGCCGTGTTCATATGGCTTTGGACATTGCGCGAGGCATGAACTATCTTCACCATTGCAATCCACCTATTATTCACCGAGATTTGAAATCATCGAACCTCTTAATCGATAAAAACTGGACTGTGAAGGTTGGAGATTTTGGTCTATCTCGGCTTAAGCATGAGACTTATCTAACAACTAAGACAGGAAAGGGCACGCCTCAATGGATGGCACCTGAAGTTCTTCGTAATGAGCCCTCGGATGAGAAGTCCGACATATACAGTTTTGGAGTCATATTGTGGGAGCTTGCAACTGAGAAGATCCCTTGGGAAAATCTCAATTCGATGCAGGTAATTGGTGCTGTTGGGTTCATGAACCAACGTCTTGAAATCCCCAAGGATGTGGATCCACAATGGGCTTCTATTATTGAGAGCTGCTGGCAAAGCGAACCTTCAAACCGGCCATCATTCCAAGTTCTGATAGAAAAGCTTAGAGAAATGCAGAGGAAGTTTGCTATGCAATTACAGGCAGCTCGTTCTGGTGGAGAGAATAATAATAATAATAACAATAATAATAATAACAATAATAACAACATCCCTCAAAAGGAAACATAA 2406 46.05 MGTPPAEELLRKIQELEEGQAHLKKEMSKLLLSGTAADSNSDHQIHHHHHHHQRSQSISPQRSRFATARRRGGAAGGLDAAAAAAAAWKRGSSSFRHSSPLQRESRTRDPLNAAVAGGGGGGGSGPAAVNFTNKQYLNILQSMGQPVYIFDLNYHIIYWNRAAEIVYGYSAAEALGQDAIELLVDPEDFTIANHVILRVMAGENWTGHLPVKNKMGQKFIVVAANTPFYDDGALVGIICVSSDLRPFQDLKIPLSVGSKQQDADPSMVRSRIPVSAKLGLDPQQPLQVAIASKLSNLASKVSNKVKLKIRTGENSSDREGGSGDSYHSDLGYPEAVLCDHRDDANSSGASTPRGDSTAHGAFSQVEEKLSGKLVRDSGDEVKGKPTIQKILSSKAEEWIAKKGLSWPWKGTEQEGGSETKAARFVWPWLQIDQEAEPANQKSSSISGKPEMQQNDSHRAVNNEASGSWSSFNVNSTSSVSSCGSTSSSAVNKVDTDIDCLDHEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFKQEVSLMKKLRHPNILLFMGVVTSPQRLCIVTEFLPRGSLFRLLQRNTGKLDWRRRVHMALDIARGMNYLHHCNPPIIHRDLKSSNLLIDKNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDIYSFGVILWELATEKIPWENLNSMQVIGAVGFMNQRLEIPKDVDPQWASIIESCWQSEPSNRPSFQVLIEKLREMQRKFAMQLQAARSGGENNNNNNNNNNNNNNNIPQKET 801
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 4967122 4971727 - CmPI595203_06g004370.1 Cmu06g0437 418097
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0437 801 NCBIfam PAS domain S-box protein 134 244 IPR000014 -
Cmu06g0437 801 MobiDBLite consensus disorder prediction 773 801 - -
Cmu06g0437 801 MobiDBLite consensus disorder prediction 369 383 - -
Cmu06g0437 801 FunFam PAS domain-containing protein tyrosine kinase 502 586 - -
Cmu06g0437 801 SUPERFAMILY Protein kinase-like (PK-like) 492 759 IPR011009 -
Cmu06g0437 801 PANTHER SERINE-THREONINE PROTEIN KINASE 60 764 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cmu06g0437 801 SUPERFAMILY PYP-like sensor domain (PAS domain) 136 243 IPR035965 -
Cmu06g0437 801 MobiDBLite consensus disorder prediction 344 358 - -
Cmu06g0437 801 Pfam Protein tyrosine and serine/threonine kinase 509 761 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu06g0437 801 CDD STKc_MAP3K-like 515 761 - -
Cmu06g0437 801 MobiDBLite consensus disorder prediction 340 383 - -
Cmu06g0437 801 Gene3D Transferase(Phosphotransferase) domain 1 587 801 - -
Cmu06g0437 801 MobiDBLite consensus disorder prediction 35 72 - -
Cmu06g0437 801 CDD PAS 143 244 IPR000014 -
Cmu06g0437 801 Gene3D PAS domain 144 246 - -
Cmu06g0437 801 ProSiteProfiles Protein kinase domain profile. 509 769 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g0437 801 PRINTS Tyrosine kinase catalytic domain signature 732 754 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu06g0437 801 PRINTS Tyrosine kinase catalytic domain signature 583 596 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu06g0437 801 PRINTS Tyrosine kinase catalytic domain signature 669 679 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu06g0437 801 PRINTS Tyrosine kinase catalytic domain signature 688 710 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu06g0437 801 PRINTS Tyrosine kinase catalytic domain signature 622 640 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu06g0437 801 Coils Coil 6 26 - -
Cmu06g0437 801 SMART pas_2 134 201 IPR000014 -
Cmu06g0437 801 MobiDBLite consensus disorder prediction 435 465 - -
Cmu06g0437 801 SMART serkin_6 509 769 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g0437 801 ProSiteProfiles PAS repeat profile. 132 203 IPR000014 -
Cmu06g0437 801 FunFam PAS domain-containing protein tyrosine kinase family protein 587 778 - -
Cmu06g0437 801 MobiDBLite consensus disorder prediction 93 123 - -
Cmu06g0437 801 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu06g0437 801 Gene3D Phosphorylase Kinase; domain 1 502 586 - -
Cmu06g0437 801 MobiDBLite consensus disorder prediction 775 801 - -
Cmu06g0437 801 Pfam PAS fold 135 243 IPR013767 GO:0006355(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0437 Cmu-Chr6:4967122 Cmu10g2661 Cmu-Chr10:33407916 2.50E-90 dispersed
Cmu06g0437 Cmu-Chr6:4967122 Cmu04g1017 Cmu-Chr4:24758307 5.10E-91 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75595 PF07714 PK_Tyr_Ser-Thr 3.70E-69 CL0016 Cmu PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0437 - - - 0.0