Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0463 ATGGCCGCTGAGGGAAGCACAGAGACAGACAACCTTCTCACACTTCTCAACCCTCCTTCTTGGCGGATAAAGTGGACTGCAGTGGAAGAAAAGCAGAAAACAGTTCAACTATTGGAGGAAAGAGCCAGCTCTCTTACGCCTTGTGGAATGGATCTGAGCCACATGAAAGGATCGATGCCGATGCCGATGCCGACGCCGACTTCAATTTCTGCTAGAAAATCCACAGATATGGTTTCTGATCAGTTCCCGGCCGGTCTTCGCGTCCTGGTTGTTGACGACGATCCTACCTGTCTCAGGATCTTGGAAAAGATGCTTCAGAATTGCTGCTATGCCGTGACGAAATGCAACCGGGCGGAGATTGCGTTATCCATGCTTCGTGAGAACAAAAATGGTTATGATATTGTTTTAAGCGATGTGCATATGCCTGACATGGATGGATTCAAGCTTCTAGAGCAAGTTGGGCTGGAGATGGATTTGCCTGTTATCATGATGTCAGCTGATGATGGGAAGAATGTTGTGATGAAGGGAGTGATTCATGGTGCTTGTGATTACCTGATCAAACCCGTTCGGATAGAAGCACTCAGGAACATATGGCAACATGTAGTTCGAAAGAGAAAGACTGAATGGAAGGATTTAGAGCAATCCGGTAGCGTGGACGATGGAGATCGAGAGCAAAATCTGTCTGAAGGTGCAAATTATTCGTCTTCGGCATACGAAGGAAGTTGGAACAGCTCGAAGAGGAGGAGGGATGCTGAAGAAGAGCCCGAGGAGAGGGACGATACATCGACGTTAAAGAAGCCGAGGGTGGTATGGTCAGTTGAGCTCCATCAACAGTTTGTCGCTGCAGTTAATCAGCTAGGCATTGACAAGGCTGTCCCTAAGAAGATATTGGAGTTGATGAATGTTCCGGGGCTTACTAGAGAAAATGTTGCCAGTCATCTTCAGAAATATCGCTTATATCTTAGAAGGCTTAGTGGAGTATCACCACATCAAAGTAATTTGAACAATTCTTTTATCAACCCCCAAGACCCACCTTATGGGTCAATGGCCTCATTCAATGGGATTGATCTTCAAACGCTTTCGGTCACCGGCCAACTCTCGCCACAAAGTCTTGCTGCCCTCCAAGCAACGGGACTTCATAGGCCAACCGCAAAATCTAGCATATCCATGGCTCTTGTTGATCAGAACAACATATTCAGTTTTGAAAACCCAAAATTGAGGTTTGTTGAGGACCAAACACAGCACCTAAATAACAGTAAACCAGTAAATTTGTTTCATGGGATTCCAACAAAAATGGAGCCAAAGCAGCTTGCCAATATGCAGCATCCTTCTGTGCAGTCTCAGGGGAACATAAATATGCAACTCAATATCAAGAGCGAACATGGTGGAACTCAATTAATGCATTTGTCTCAACACCAAACTGTGGGACAGACTCTAAGTAACTCTCCTGCTAGCCACTTGAGGAAGCCGATCGTATCAGGTAACGTTACGAGGGGAAATGGGACTGCTGATAATAGCCACAGATCTGGATACAACCTAGTTTCGCCAACATCGGTGATGGTGAACTATCCAATGAGCCAAACCACGGAATTGTCCAACAATTTTTCTCTTCAGAGTAATTCATCGGTATCTACCTTGACTTGTAAAGGGGTATTTCAAGAAGAGATTAGTTCAGATCTAAAAGTATCGGGCGGACTAATGTTGAGTTATGATGTTTTTAGTGACTTGCATCTGCAGAAATCCCATGACTGGGATTCTCAAAACGTAAGCACCTTGGCCTTTGGTAATTCTCACCATGGGAACTTCATACAGGATAGCTTTGATATCCCACCCTCCACTTTAATTCATCATGGTTTTCCTTCAAGCCAAACAAATGGACAAAACCAAAATTCGTCAGTCATTGGAAAGACTATCTTTTCCTTTGCGGATTCAACTCAACCCGAAAATCCACAAAGTATCGCCCAAAACTCGCTTCTCGATCCCGTGGAGGTCAAAACTCAGAGAATCCCAGATGCAAGCTATCAAACTGACCTCTTATCTGAGGACTTTGGCCAGGATGAACTTCTTGGCGTCTTTCTCAAACAACAGCAACAAGGAGACAACGGATCGGTCGGATTTCAATGCAAGTCTAAAGCAATCTTCCTCAGAATGCTCACACAGAAGATGCAAATCTTACTCCAACTTCGATTGGCGTTCAAAGCCTGA 2205 44.81 MAAEGSTETDNLLTLLNPPSWRIKWTAVEEKQKTVQLLEERASSLTPCGMDLSHMKGSMPMPMPTPTSISARKSTDMVSDQFPAGLRVLVVDDDPTCLRILEKMLQNCCYAVTKCNRAEIALSMLRENKNGYDIVLSDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDGKNVVMKGVIHGACDYLIKPVRIEALRNIWQHVVRKRKTEWKDLEQSGSVDDGDREQNLSEGANYSSSAYEGSWNSSKRRRDAEEEPEERDDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSPHQSNLNNSFINPQDPPYGSMASFNGIDLQTLSVTGQLSPQSLAALQATGLHRPTAKSSISMALVDQNNIFSFENPKLRFVEDQTQHLNNSKPVNLFHGIPTKMEPKQLANMQHPSVQSQGNINMQLNIKSEHGGTQLMHLSQHQTVGQTLSNSPASHLRKPIVSGNVTRGNGTADNSHRSGYNLVSPTSVMVNYPMSQTTELSNNFSLQSNSSVSTLTCKGVFQEEISSDLKVSGGLMLSYDVFSDLHLQKSHDWDSQNVSTLAFGNSHHGNFIQDSFDIPPSTLIHHGFPSSQTNGQNQNSSVIGKTIFSFADSTQPENPQSIAQNSLLDPVEVKTQRIPDASYQTDLLSEDFGQDELLGVFLKQQQQGDNGSVGFQCKSKAIFLRMLTQKMQILLQLRLAFKA 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5224798 5232219 - CmPI595203_06g004630.1 Cmu06g0463 418123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0463 734 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 265 322 IPR017930 -
Cmu06g0463 734 FunFam Two-component response regulator 262 325 - -
Cmu06g0463 734 MobiDBLite consensus disorder prediction 209 263 - -
Cmu06g0463 734 PIRSF RR_ARR_type-B 68 704 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Cmu06g0463 734 MobiDBLite consensus disorder prediction 209 226 - -
Cmu06g0463 734 CDD REC_typeB_ARR-like 88 202 - -
Cmu06g0463 734 MobiDBLite consensus disorder prediction 227 242 - -
Cmu06g0463 734 Gene3D - 86 220 - -
Cmu06g0463 734 MobiDBLite consensus disorder prediction 478 511 - -
Cmu06g0463 734 SMART REC_2 86 198 IPR001789 GO:0000160(InterPro)
Cmu06g0463 734 MobiDBLite consensus disorder prediction 243 263 - -
Cmu06g0463 734 MobiDBLite consensus disorder prediction 495 511 - -
Cmu06g0463 734 FunFam Two-component response regulator 86 223 - -
Cmu06g0463 734 Pfam Response regulator receiver domain 88 196 IPR001789 GO:0000160(InterPro)
Cmu06g0463 734 SUPERFAMILY Homeodomain-like 263 323 IPR009057 -
Cmu06g0463 734 Pfam Myb-like DNA-binding domain 268 318 IPR001005 -
Cmu06g0463 734 Gene3D - 263 325 - -
Cmu06g0463 734 SUPERFAMILY CheY-like 85 209 IPR011006 -
Cmu06g0463 734 ProSiteProfiles Response regulatory domain profile. 87 202 IPR001789 GO:0000160(InterPro)
Cmu06g0463 734 PANTHER TWO-COMPONENT RESPONSE REGULATOR 81 325 IPR045279 GO:0009736(InterPro)
Cmu06g0463 734 NCBIfam myb-like DNA-binding domain, SHAQKYF class 266 319 IPR006447 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0625 Cmu-Chr4:19965997 Cmu06g0463 Cmu-Chr6:5224798 3.50E-21 dispersed
Cmu05g1682 Cmu-Chr5:26887605 Cmu06g0463 Cmu-Chr6:5224798 1.30E-87 dispersed
Cmu06g0070 Cmu-Chr6:665566 Cmu06g0463 Cmu-Chr6:5224798 4.30E-40 dispersed
Cmu06g0463 Cmu-Chr6:5224798 Cmu06g1276 Cmu-Chr6:23871806 1.50E-81 dispersed
Cmu05g0703 Cmu-Chr5:6051007 Cmu06g0463 Cmu-Chr6:5224798 1.20E-215 wgd
Cmu06g0463 Cmu-Chr6:5224798 Cmu09g0523 Cmu-Chr9:4815092 5.30E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6354 PF00072 Response_reg 7.00E-22 CL0304 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0463 K14491 - csv:101210138 1202.96