Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0496 ATGAACGCCATTGCAGCAGCCCGACTCCCAGCTCGGTGTTCATCGGTAAGAAATCTTTTGTACGAATTCGATCTTCAGAATGAATCAAGATCCTCATCTTTCTTCATGTTTCAAGCCATCAATCTCTTTATATCAGGTTTTTTGGAAGATTGTGTCGGTGCGATTATGGATGGGAATAAGGACGAAGCTTTAAGATGTATTCGCATGGCGGAAGAAGCAATTGCATCGGGGAATAAAGAGCGAGCACTTAGATTCATTAAAATTGCTTGTCGCCTTAATCAGAGTTTGCAAGTGGATGAGCTATTGACGGCGTGCGAAGAGATCGGTTCGGGATCGCCTTCATCTTCTTCCGATGAGAAACGCGCGGGAAAAGTTGAGAGTGTTTCTGGTTCAGTGAAACATGTTGATGGTTTGAATGGTGAACGTAATTACACTATAGAACACGTTCAGTTGATTAGGCAGATAAAAACAACCAAGGACTATTACAGAATTCTTGGTGTGGAGAAAACTAGTTCGGCTGAAGAGATTAAGAAAGCTTATAAGAAATTGTCCTTGAAAGTTCACCCTGATAAAAACAAGGCTCCTGGTTCAGATGAAGCATTCAAGAAATTATCCAAGGCTTTCATGTGTTTGAGCGATGATACTTTGAGGAGGCAATATGATCACACGGGTTTGGTTGATCAGTATGAGTACAACCAACAGCATAATGTAAGGCATAGGAGAAGGAGAACGGGTCATGATTTGTTTGAAGAAAATTTCGATCCTGATGAGATACTCAGAGCGTTCTTTGGGCAGGGAAATATGTTTCAGACTAGTCGTGCTTATACTTATAGAACTGGAGGTGCGGGAAGCCAACAGAGGACAGAATCTGATGGGGGAGGTCCCAGCTTGTTGATTATTCTTCTAATGTTACCATTCTTGTTAATTTGCTTGTTGGCTTATATGCCATTTCCAGAGCCGGACTATGCTTTGCATAAAAACCTATCCTATAGTGTTCCTATGGCAACGGAGAAACATGGAGTGGAATTTTTTGTTAAATCATCTGATTTTGATGTAAGATATCCTCCTGGAAGCCCAGGTCGAGCTGAAATAGAGAATAGTGTGCTGAGGGATTATAGAAACATGGTTTGGCGTTATTGTCATGTAGAACTCCAGAGACGCCAGTGGAATAGAAATCTCCCAACTCCTCACTGCGAGAAGCTGAATAATCTCGGTGTAGCATAA 1224 41.75 MNAIAAARLPARCSSVRNLLYEFDLQNESRSSSFFMFQAINLFISGFLEDCVGAIMDGNKDEALRCIRMAEEAIASGNKERALRFIKIACRLNQSLQVDELLTACEEIGSGSPSSSSDEKRAGKVESVSGSVKHVDGLNGERNYTIEHVQLIRQIKTTKDYYRILGVEKTSSAEEIKKAYKKLSLKVHPDKNKAPGSDEAFKKLSKAFMCLSDDTLRRQYDHTGLVDQYEYNQQHNVRHRRRRTGHDLFEENFDPDEILRAFFGQGNMFQTSRAYTYRTGGAGSQQRTESDGGGPSLLIILLMLPFLLICLLAYMPFPEPDYALHKNLSYSVPMATEKHGVEFFVKSSDFDVRYPPGSPGRAEIENSVLRDYRNMVWRYCHVELQRRQWNRNLPTPHCEKLNNLGVA 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5530514 5531956 + CmPI595203_06g004960.1 Cmu06g0496 418156

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0496 407 Gene3D DnaJ domain 157 275 IPR036869 -
Cmu06g0496 407 ProSiteProfiles dnaJ domain profile. 160 224 IPR001623 -
Cmu06g0496 407 CDD DnaJ 160 213 IPR001623 -
Cmu06g0496 407 SMART dnaj_3 159 216 IPR001623 -
Cmu06g0496 407 Pfam DnaJ domain 160 221 IPR001623 -
Cmu06g0496 407 Pfam Domain of unknown function (DUF1977) 318 388 IPR015399 -
Cmu06g0496 407 SUPERFAMILY Chaperone J-domain 156 236 IPR036869 -
Cmu06g0496 407 PRINTS DnaJ domain signature 180 195 IPR001623 -
Cmu06g0496 407 PRINTS DnaJ domain signature 162 180 IPR001623 -
Cmu06g0496 407 PRINTS DnaJ domain signature 196 216 IPR001623 -
Cmu06g0496 407 PANTHER AT29763P-RELATED 56 404 IPR051100 GO:0005789(PANTHER)|GO:0030544(PANTHER)|GO:0051085(PANTHER)|GO:0071218(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0496 K09518 - - csv:101210044 607.831
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0496 Cmu-Chr6:5530514 Cmu06g1158 Cmu-Chr6:22301917 3.10E-60 dispersed
Cmu06g0496 Cmu-Chr6:5530514 Cmu06g1157 Cmu-Chr6:22295943 8.90E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g188 . . . . . . . Bma05g01033 . Cmo17g00319 . . . . . . . . . . . . . . Cla06g00476 Cam06g0510 Cec06g0511 Cco06g0514 Clacu06g0494 Cmu06g0496 Cre06g1267 . . Cone7ag0143 Cone4ag0147 . . Chy11g01513 . . . . . Bpe05g00834 . . . . . . . Cma17g00329 . Car17g00303 Cpe12g00279 . Bhi12g02049 . . . . . . . . . . . . . Lsi09g01433 . . Cme11g02015
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010696 0 3 0 1 1 0 1 1 0 2 1 0 1 2 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 1 32