Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0531 ATGGCGCCTGAAATGATGGTCGAATCGGGCTTGTCGATAGTGGATTTTGGGATGGAGTTGGTGGCAGATCATACTTCGGTAGTTTCTTTAAACTTATTTGTAGCTCTTCTTTGCGGTTGCATTGTTATTGGCCATTTGTTAGAGGAAAATCGATGGATCAACGAGTCCATTATAGCCCTTGTCATTGGCTTGTGTACCGGCATCATAATATTGCTAACAACTAGAGGGAAAAGCTCGCATTTATTTTTATTTAATGAAGAGCTTTTCTTTATTTATCTCCTTCCGCCTATCATTTTCAACGCCGGGTTCCAAGTCAAGAAGAAGCAGTTTTTCCGCAACATCATGACCATAGTGCTTTTTGGTGCTTTTGGCACTCTCATATCGTTCTGTATTATATCATTAGGCGCTTTGCACTTCTTCCAGAAAATGAATATTGGTTCCCTTGATCTTGGAGATTATCTAGCTATTGGAGCAATTTTTTCTGCAACAGACTCTGTTTGCACCTTACAGGTTCTTAATCAGGACGAGACGCCTCTTCTGTATAGCCTGGTTTTTGGGGAAGGTGTTGTAAATGATGCCACATCGGTTGTGCTATTCAATGCAATCCAAAACTTTGACCTTTCTCATATGAATTCAAGCATCGTTCTGCAATTCATTGGGAACTTTTTGTATCTGTTCATTGCAAGTACTGTGCTGGGAATTTTAGTTGGCCTCCTTAGTGCATACATAATTAAGAAGCTCTACTTTGGCAGGCATTCTACTGATCGTGAAGTTGCTCTAATGATACTCATGGCGTATTTCTCTTATATGCTAGCTGAACTCTTCTATCTAAGTGCAATTCTCACTGTATTCTTTTGCGGCATTGTTATGTCTCACTATACATGGCATAACGTGACTGAAAGTTCAAGAGTCACTACAAAGCATGCTTTTGCCACCCTTTCTTTTGTTGCCGAGATCTTCATCTTTCTTTACGTTGGCATGGATGCGCTTGATATCGAGAAGTGGAGATTTGTTAGCCACAGTCCTGGAAAATCAATTGGGGTGAGCTCAATACTGTTGGGATTGGTTCTGGTTGGAAGAGCAGCATTCGTTTTTCCTTTATCCTCCTTGTCCAATCTGACCAAGAAGTCCTCGCATGAGAAACTCAACTTGGAACAACAAGTCACTATTTGGTGGGCTGGTCTCATGCGTGGTGCTGTATCCATGGCACTTGCATATAATCAGTTCACTAGGTCAGGCCACACCCATTTACCAGGCAATGCAATCATGATCACCAGTACCATCACAGTTGTTCTTTCCAGTACAGTGGTATTTGGAATGATGACGAAACCCCTAATAGGAATTTTGCTACCCCAAGCAAAATACACAATGAGCATGCTCTCTTCCGAACCCTCTTCCCCAAAATCATTCACGGTCCCACTCCTCAGTAATGACCAAAATACCCCTTCCCCTCTTGGCCTGTTTCTGAGAATCCCATCCCATACAGTTCACCATTACTGGCGAAGATTTGATGACGCCTTTATGCGCCCTGTGTTTGGAGGACGGGGCTTTGTGCCCTTCATCCCAGGCTCCCCTACGGAAGACCCAACACAACAATGGCAAACTGAAGGAGTGGAAGCCATTGATGATAATAAAACCATTCTTATATAG 1650 42.67 MAPEMMVESGLSIVDFGMELVADHTSVVSLNLFVALLCGCIVIGHLLEENRWINESIIALVIGLCTGIIILLTTRGKSSHLFLFNEELFFIYLLPPIIFNAGFQVKKKQFFRNIMTIVLFGAFGTLISFCIISLGALHFFQKMNIGSLDLGDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQNFDLSHMNSSIVLQFIGNFLYLFIASTVLGILVGLLSAYIIKKLYFGRHSTDREVALMILMAYFSYMLAELFYLSAILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRFVSHSPGKSIGVSSILLGLVLVGRAAFVFPLSSLSNLTKKSSHEKLNLEQQVTIWWAGLMRGAVSMALAYNQFTRSGHTHLPGNAIMITSTITVVLSSTVVFGMMTKPLIGILLPQAKYTMSMLSSEPSSPKSFTVPLLSNDQNTPSPLGLFLRIPSHTVHHYWRRFDDAFMRPVFGGRGFVPFIPGSPTEDPTQQWQTEGVEAIDDNKTILI 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5886007 5892326 + CmPI595203_06g005310.1 Cmu06g0531 418191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0531 549 Pfam Sodium/hydrogen exchanger family 34 445 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Cmu06g0531 549 PRINTS Na+/H+ exchanger signature 102 116 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu06g0531 549 PRINTS Na+/H+ exchanger signature 157 167 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu06g0531 549 PRINTS Na+/H+ exchanger signature 117 125 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu06g0531 549 PRINTS Na+/H+ exchanger signature 88 99 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu06g0531 549 Gene3D - 150 201 - -
Cmu06g0531 549 PANTHER SODIUM/HYDROGEN EXCHANGER 26 536 IPR018422 GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0531 Cmu-Chr6:5886007 Cmu09g0610 Cmu-Chr9:5598790 1.40E-161 dispersed
Cmu01g1089 Cmu-Chr1:17624650 Cmu06g0531 Cmu-Chr6:5886007 2.60E-34 transposed
Cmu03g2236 Cmu-Chr3:31022407 Cmu06g0531 Cmu-Chr6:5886007 6.00E-217 transposed
Cmu09g1999 Cmu-Chr9:36062740 Cmu06g0531 Cmu-Chr6:5886007 6.40E-167 transposed
Cmu06g0531 Cmu-Chr6:5886007 Cmu09g0609 Cmu-Chr9:5585183 3.30E-198 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0531 - - - 0.0