Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0540 ATGAGAACTTCATATCATGGCTTCCCCCTCTTCTCTGTACTGGTTTTCAGTACTCTTCTTGCTCTTCAGGTCGTCAATGGAGCTTTGATCAATAATTTCTATAGGAGAAGTTGCCCCAAAGCTGAGAGAATCATTCAAGACGTCACCTTTCGTCTTGCACGATCAAATCCCAGCCTCGGCGCTCAACTCCTCAGACTTCAATTCCACGACTGTTTCGTTCGGGGATGTGATGCTTCAATTCTATTAGATACAGTTGGAACAAACCCATCAGAGAAAGATGCAAGGCCGAACCAATCTCTATTAGGGTTTGATGCCATTGACAAAATCAAGTTTGAGGTCGAAAAAGCTTGTCGTGGAGTTGTTTCTTGTGCTGATATTCTTGCTCTTGCTGCTCGTGATGCTGTTTCTTTTCCGTTCAAGAATCGGCCGCAATGGCCAGTCTTAACCGGAAGAAGAGACGGGACAGTTTCACGATCATCAGAAGTTACCGGTAATATTCCGTCGCCGTTCTCCGATTTTGCCACTCTTAAGCAACTCTTCCAGAAGAAAGGCCTAACCGTGACCGACCTGGTGATTTTATCAGGTGCTCACACAATTGGAGTAGCTCATTGTGGCACATTCTCAAGGAGGCTTTATAACTTCACAGGCAAAGGAGATGCAGATCCTTCATTAGATCCAAAATATGCAGATTTCCTTAGAACAAAATGTCCAAATCCAGCTGACCCTTCCATTACAGTTGAAATGGATCCAAGGAGTTCTCGTTCCTTTGACAGTGACTATTTCAAAATTGTCACACAAAAAAAGGGTTTGTTTCAATCTGATGCCGCACTTCTCACCGACGCTTCGTCGTCTCGTACCGTCAAACAGTTGCAGAATCCAAGGGCTTTCTCTTCTAGCTTTGCTAATTCCATGTTAAAGATGGCTGCCATTGAAGTACTCACGGGACCTAATAATGGTGAAATTAGACAACGATGTCGTTTTGTCAATTAA 990 43.74 MRTSYHGFPLFSVLVFSTLLALQVVNGALINNFYRRSCPKAERIIQDVTFRLARSNPSLGAQLLRLQFHDCFVRGCDASILLDTVGTNPSEKDARPNQSLLGFDAIDKIKFEVEKACRGVVSCADILALAARDAVSFPFKNRPQWPVLTGRRDGTVSRSSEVTGNIPSPFSDFATLKQLFQKKGLTVTDLVILSGAHTIGVAHCGTFSRRLYNFTGKGDADPSLDPKYADFLRTKCPNPADPSITVEMDPRSSRSFDSDYFKIVTQKKGLFQSDAALLTDASSSRTVKQLQNPRAFSSSFANSMLKMAAIEVLTGPNNGEIRQRCRFVN 329
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 5979064 5981938 + CmPI595203_06g005400.1 Cmu06g0540 418200
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0540 329 FunFam Peroxidase 167 307 - -
Cmu06g0540 329 CDD secretory_peroxidase 32 328 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cmu06g0540 329 ProSitePatterns Peroxidases active site signature. 60 71 IPR019794 GO:0004601(InterPro)
Cmu06g0540 329 FunFam Peroxidase 32 179 - -
Cmu06g0540 329 Pfam Peroxidase 49 291 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu06g0540 329 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu06g0540 329 PRINTS Haem peroxidase superfamily signature 189 204 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu06g0540 329 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu06g0540 329 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu06g0540 329 PRINTS Haem peroxidase superfamily signature 249 264 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu06g0540 329 ProSitePatterns Peroxidases proximal heme-ligand signature. 189 199 IPR019793 -
Cmu06g0540 329 Gene3D - 32 329 - -
Cmu06g0540 329 PANTHER PEROXIDASE 25-RELATED 30 325 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Cmu06g0540 329 ProSiteProfiles Plant heme peroxidase family profile. 28 329 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu06g0540 329 Gene3D Peroxidase, domain 2 167 307 - -
Cmu06g0540 329 SUPERFAMILY Heme-dependent peroxidases 30 329 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu06g0540 329 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu06g0540 329 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu06g0540 329 PRINTS Plant peroxidase signature 188 200 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu06g0540 329 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu06g0540 329 PRINTS Plant peroxidase signature 302 315 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu06g0540 329 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu06g0540 329 PRINTS Plant peroxidase signature 247 262 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu06g0540 329 PRINTS Plant peroxidase signature 263 280 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0861 Cmu-Chr2:10451928 Cmu06g0540 Cmu-Chr6:5979064 1.10E-79 dispersed
Cmu06g0540 Cmu-Chr6:5979064 Cmu11g0774 Cmu-Chr11:8239138 2.00E-65 dispersed
Cmu06g0540 Cmu-Chr6:5979064 Cmu06g0541 Cmu-Chr6:5998525 4.10E-156 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0540 K00430 - csv:101215642 552.362