Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0575 ATGGAAATGGGAGTAGAAAATGATGATTTGTTGTTTGCGGAACTTACTCGAAGGATTTCACTTCTTATTATGGACGACGATGAGCTTCCGATCGTTCATATGGATTTAACTAGAACAGTACACCAACTTCAACCTAAGCAATTACCATTAACGGTGGATTACAAGAACGGTTTAATAAGGGAAAGCAAAGGCACTGGAGTTTTCATTCCAACGCGATTACCACGGTCTAAGAGGAAGCAAAAGAATGTCACCGACTATAAAATCAAATCAGAAAACAAGAGGCTCAATCACCAACCATCTTCAACATATTATTCTAGGCTTATCATGGCGTCCGCGATTCTGAAGCGAGTCAGCGCCTCCGCAATGAGCTCGCTGGTTGAATCTATGCGAATCGGAGCTTCATCGCGAGCTTTTGCGGCGGTGGCGGTCGGAACTGACATCGTCTCCGCTGCACCGGACGTTTCTCTCCAGAAGGCTCGGAGTTGGGACGAAGGTGTCTCCTCCAAGTTCTCCACGACTCCGGTCAAAGACATTTTCAAGGGCAAGAAGGTCGTCATCTTTGGGCTTCCTGGTGCATATACAGGAGTTTGTTCCCAGCAGCACGTTCCTAGTTACAAGAATAAAATTGATGACTTCAAGGCTAAAGGAATTGATTCTGTTATTTGTGTGTCTGTTAATGATCCATATACTCTCAATGGCTGGGCTGAGAAACTTGAAGCGAAAGATGCTATACAATTTTTTGGGGACTTCGATGGGAGATTTCACAAGAGCCTGGAACTGGATAAAGATCTTTCTGCTGCTTTGCTGGGCCCCCGTTCTCAAAGATGGTCAGCATATGTTGTAGATGGAAAAGTTAAGGCTCTTAACATAGAGGAAGCTCCATCTGACTTTAAGGTTACTGGGGCAGAGGTCATTTTGAAGCAAATTTAG 930 44.52 MEMGVENDDLLFAELTRRISLLIMDDDELPIVHMDLTRTVHQLQPKQLPLTVDYKNGLIRESKGTGVFIPTRLPRSKRKQKNVTDYKIKSENKRLNHQPSSTYYSRLIMASAILKRVSASAMSSLVESMRIGASSRAFAAVAVGTDIVSAAPDVSLQKARSWDEGVSSKFSTTPVKDIFKGKKVVIFGLPGAYTGVCSQQHVPSYKNKIDDFKAKGIDSVICVSVNDPYTLNGWAEKLEAKDAIQFFGDFDGRFHKSLELDKDLSAALLGPRSQRWSAYVVDGKVKALNIEEAPSDFKVTGAEVILKQI 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6440968 6447151 + CmPI595203_06g005750.1 Cmu06g0575 418235

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0575 309 FunFam Peroxiredoxin 139 309 - -
Cmu06g0575 309 SUPERFAMILY Thioredoxin-like 166 307 IPR036249 -
Cmu06g0575 309 PANTHER PEROXIREDOXIN 143 309 IPR037944 GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0008379(InterPro)|GO:0008379(PANTHER)|GO:0034599(PANTHER)|GO:0034599(InterPro)|GO:0042744(PANTHER)|GO:0045454(PANTHER)
Cmu06g0575 309 ProSiteProfiles Thioredoxin domain profile. 145 309 IPR013766 -
Cmu06g0575 309 Pfam Redoxin 150 302 IPR013740 GO:0016491(InterPro)
Cmu06g0575 309 CDD PRX5_like 152 307 IPR037944 GO:0008379(InterPro)|GO:0034599(InterPro)
Cmu06g0575 309 Gene3D Glutaredoxin 139 309 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0575 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0910 Cmu-Chr6:12620069 Cmu06g0575 Cmu-Chr6:6440968 7.50E-23 transposed
Cmu10g2664 Cmu-Chr10:33458427 Cmu06g0575 Cmu-Chr6:6440968 7.20E-27 transposed
Cmu05g0589 Cmu-Chr5:5002305 Cmu06g0575 Cmu-Chr6:6440968 1.40E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g448 . . . . . . . . Cmo08g01135 . . . . . . . . . . . . . . . Cla06g00551 Cam06g0594 Cec06g0592 . Clacu06g0580 Cmu06g0575 Cre06g1341 . . Cone7ag0223 Cone4ag0214 . . . . . . . . . . . . . . . Cma08g01163 Cma17g00264 Car08g01041 Car17g00238 Cpe12g00220 Cpe17g00132 Bhi12g01813 . . . . . . . . . . . . . Lsi09g01348 . . Cme11g01928
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013072 0 1 0 0 0 1 2 1 1 1 0 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 28