Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0580 ATGCAAGATTTCTTCGGATCTGTTCGTCGATCCTTAGTATTTCTAGCTCCCGACGGTGACGACGGTGGGAGGTTCGGTGGCCTTGTCGAGAAGATCGGTTCTAGCATCCGTAAATCTCGAAATGGACTGTTTTCTAAACAGTCACTGCGGGCTCTGCCTCCGGTTGCGAAGGAAGATGCACCTCCGATTTGGTGGCGGAAGGGAGAGTTGATCGGATGTGGTGCTTTTGGTCGAGTTTATATGGGGATGAATCTCGATTCTGGAGAGCTTCTTGCAGTCAAACAAGTCTCAATTGCGGCTAATAGTGCTTCAAGGGAGAAAGCCCAAGCTCACATACGGGAGCTGGAGGAGGAAGTGAGGCTTTTGAAGAATCTTTCTCACCCCAATATTGTGAGATATCTGGGAACTGCAAGAGAAGAAGATTCATTAAATATTCTATTGGAGTTTGTTCCTGGAGGATCAATATCTTCTTTGTTAGGGAAATTTGGGTCTTTCCCCGAGTCTGTTATAAAGACCTACACTAAGCAGCTATTATTGGGGCTTGAGTACCTTCATAAGAACGGCATCATGCATAGGGATATAAAGGGTGCAAATATTCTTGTAGACAATAAGGGGTGTATTAAACTTGCAGATTTTGGTGCATCCAAGAAAGTGGTTGAGCTGGCAACTATAAATGGAGCCAAATCAATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGACATAGCTTCTCTGCTGATATATGGAGTGTGGGGTGTACTGTTATTGAAATGGCAACAGGGAAACCTCCATGGAGCCAACAGTATCAAGAGGTCGCTGCTCTTTTCCATATAGGAAATACTAAGTCCCATCCGCCCATTCCTGAGAATCTATCTGCTGAGGCTAAAGATTTTCTGTTAAAATGTCTACAAGAGGAACCAAACTCAAGGCCTACTGCATCAGATTTGCTGCAGCATCCATTTGTCTCATGTGAGTATCAAGAACCTGTTGCAGTAGTCCTTGCCTCTTCTGTGGAATCTGGGAAACAGATGGCTGATTCTAGGCTGAACTCCAATGATCTTAAAAAGTCTACAATCCAACGTTCAACCTGTGAGGGCTTGAAAGATATTTGTGAAATGGGTAGCTTGAGGTGCTCTTCTGTATTTTCTGGGAACTATGGGTCACAGTCCAACTGGGGCTCGAGCAATTTTGAGGATGACATGTGCCAGATAGATGATAAAGATCTGTTTGTTAGTTCATCAATTAAGTACAAATCTATTTTATCATCAACTGATTTGAATAAGAGTTTCAATCCTATGTGTGAACCCACTGATGACTTGGATGAGAGCTCAGAGTTGGGAGGCAATTTAATGGAATTGTCTGGCGTTCAAACTGGCAAGGGGAGTGACTTCACTTTTCCTTGTGGTCAATCAGCAGCTGAGGATGATGAAGAGGTTACGGAATCAAAGATTAAAGCCTTCCTGGATGAGAAGGCTCTAGAACTAAAGAAGCTGCAAACACCTTTATACGAAGAGTTCCGTAGCACAGTTAATGCAGCTAATGCATTAGGAACAGTTGGAATTGAGAATATCAAGAGCGTGTCTAAGTTTTTGAAATTGCCTCCCAAATGTGGGTCACCAAGTAAGCTGCGTGGTAAAAGACTCTCATCAATTGATGCTGGTAACTGTTCCAGCCGTCAGAGCCGTATAAAACAAGCTGGCATATTGCAAGATCGAGCTTTGCAGGAAATTCAGTCGCCACAACTTGGGGAATGGAACAACTTACTTCAAACCCAGCCAGACTCTTCTACACCAAGTTTCTCTGAAAGACAAAGGAAATGGAAAGAAGAGCTTGAGGAAGAACTTAAAAGGAAACGAGAAATGATGCGGAGAGGAATTGTAGGAGCAATTCACTAA 1911 43.43 MQDFFGSVRRSLVFLAPDGDDGGRFGGLVEKIGSSIRKSRNGLFSKQSLRALPPVAKEDAPPIWWRKGELIGCGAFGRVYMGMNLDSGELLAVKQVSIAANSASREKAQAHIRELEEEVRLLKNLSHPNIVRYLGTAREEDSLNILLEFVPGGSISSLLGKFGSFPESVIKTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKKVVELATINGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGNTKSHPPIPENLSAEAKDFLLKCLQEEPNSRPTASDLLQHPFVSCEYQEPVAVVLASSVESGKQMADSRLNSNDLKKSTIQRSTCEGLKDICEMGSLRCSSVFSGNYGSQSNWGSSNFEDDMCQIDDKDLFVSSSIKYKSILSSTDLNKSFNPMCEPTDDLDESSELGGNLMELSGVQTGKGSDFTFPCGQSAAEDDEEVTESKIKAFLDEKALELKKLQTPLYEEFRSTVNAANALGTVGIENIKSVSKFLKLPPKCGSPSKLRGKRLSSIDAGNCSSRQSRIKQAGILQDRALQEIQSPQLGEWNNLLQTQPDSSTPSFSERQRKWKEELEEELKRKREMMRRGIVGAIH 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6480080 6484783 + CmPI595203_06g005800.1 Cmu06g0580 418240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0580 636 ProSiteProfiles Protein kinase domain profile. 65 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g0580 636 Gene3D Transferase(Phosphotransferase) domain 1 65 368 - -
Cmu06g0580 636 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 53 329 IPR050538 -
Cmu06g0580 636 FunFam Serine/threonine-protein kinase STE11 62 155 - -
Cmu06g0580 636 CDD STKc_MAPKKK 65 327 - -
Cmu06g0580 636 SMART serkin_6 65 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g0580 636 MobiDBLite consensus disorder prediction 593 612 - -
Cmu06g0580 636 Pfam Protein kinase domain 66 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g0580 636 Coils Coil 606 629 - -
Cmu06g0580 636 Coils Coil 98 125 - -
Cmu06g0580 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu06g0580 636 SUPERFAMILY Protein kinase-like (PK-like) 65 328 IPR011009 -
Cmu06g0580 636 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524(InterPro)
Cmu06g0580 636 FunFam Mitogen-activated protein kinase kinase kinase 2 64 356 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1566 Cmu-Chr2:29502719 Cmu06g0580 Cmu-Chr6:6480080 2.80E-207 dispersed
Cmu04g0151 Cmu-Chr4:2885174 Cmu06g0580 Cmu-Chr6:6480080 1.40E-31 dispersed
Cmu06g0580 Cmu-Chr6:6480080 Cmu10g1960 Cmu-Chr10:25228293 8.40E-65 dispersed
Cmu06g0580 Cmu-Chr6:6480080 Cmu05g0923 Cmu-Chr5:8407934 3.80E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75598 PF00069 Pkinase 3.30E-73 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0580 K20606 - csv:101217427 1202.58