Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0600 ATGAATGGTTCTTCAACAACAAATTCTGAACCAGACATCTCTGAATATGTTGAAGTTGATCCTACCGGAAGATATGGAAGATACAATGAAGTTCTTGGCAAAGGAGCATCGAAGACAGTTTACAGAGCTTTTGATGAATACGATGGCATTGAAGTGGCGTGGAATCAAGTGAAGCTTTGTGATTTTCTTCAAACTCCTGAAGATCTTGAAAGGCTGTACAGAGAAATCCATTTGTTGAAGACACTAAAACACAAAAACATAATGAAATTTTATTCTTCTTGGGTTGACACTCCAAATAGAAACATTAACTTTGTAACAGAGATGTTCACTTCTGGGACTCTCAGACAATATAGGCTGAAGCATAAGAGAGTGAATATCAGAGCTGTGAAGCATTGGTGTAGACAGATTTTAAAAGGGCTTCTCTATCTTCACAGCCATGACCCTCCTGTGATCCACAGAGACCTTAAATGTGATAATATTTTTGTAAATGGGAATCAAGGGGAAGTCAAAATTGGTGATCTTGGCCTTGCTGCTATTCTTCGTAAATCCTATGTAGCTCGATGTGTTGGAACACCAGAGTTTATGGCTCCAGAGATTTATGAAGAGGAGTATAATGAATTGGTTGATATATATTCTTTTGGGATGTGTATTTTAGAGATGGTCACTTTTGAATATCCATACAGTGAATGCACTCACCCTGCTCAGATTTACAAGAAAGTTATCTCTGGGAAGAAACCGGATGCTCTGTATAAGGTAAAGGATCTCGAGGTTCGATATTTCGTCGAGAAATGTTTGGCTACTGTGTCAACTAGGCTGTCTGCTAGGGAGCTTTTAAACGACCCTTTTCTTCAAATTGATGGTTGTGATTCTTTACTGAGGCCAATAGAGTACTATTCAGAATATGATGAAGTGAACAATTCCCTTATCAGAGGAGGGCCTTTTTATGGAATTCCTCATGGTTCTTTGGATAATGGGTATGTGAATTATTTTGGTCATGAGGCTGGGAATGGTTTGGATTACTGTCCGATTGATAACGAAGCGAATGAAATCGATCTTTTCTCCTGTCAAGAGGATGAGCATTTGGCAGATGTTGATATCACTATTAAAGGGAGAAGAAGAGGTGACGATGATATCTTTCTTCGACTTCGGATTGCAGATAAAGAAGGTCGAATTCGAAACATCTACTTTCCCTTCGATTTAGAGAATGATAGTGCTTTGAGTGTTGCAAATGAGATGGTTTCTGAGCTTGACATTACTGATCAAGATGTGAAGAAGATTGCTGATATGATAGATGGTGAAATTGCTACATTGGTGCCAGAGTGGAAGAGGGGAAAAAGTTCAGAGGAAACTCCAAATTGCACGGATTCTAATGTTTGTCACAATTGTGCTTTAAACAATTCTCTTTTGGATTATGTATCGCCGAATAATCCCGCGACGAAGAACTTGCACATTCTTCAGTGTTCTCAAGAGCATGGCTGTGCTTCTATCCATGGACGTTTTGAAGAGATTACATACCAAGTTGAGGGGTCAGAACAATTCAATGGAGACGAAAACTTGCATAGAACAACGGAGAATTCAAACGATATCCATTACACCGATATTTGGGCGCAACGAGATGGACCAGATGCAGTTTCTCAAGAATCTTTAGAAACTTGCAATGAATCTGGAACATTGGAACAGCCGAAACTCGAGAAGGAAGAAAGTAATGTAAATATGGACAATGATCATCAAATGGAATTCCAAACAAGAAACTCTAGCTCATCAAATCCTTCACTGTCCTTTGTCAACGATCACGAGAACGAAATTCGACAAGAACTAAGATGGCTCAAGGCTAAATATCAAATGCAGTTGAGGGAGCTAAGGGATCAACAGTTAGGAGTCAAGACCAAATCTCTTAGCTTGCATCCGAATCCCAACCTTGTGGAGACCGACAATGGAGCTTCGGTATCTTTGCTTTCGCCAAACTTCAATGAAGCAGCAAAAAGTAAGCCTGCCCTAACATCTCTCTCCGTTAGCAAGAATATCACTTCACATTCCTTCTATGCTGCTGTCGATAACATTATGGAAAACCAAACCTTCCAAGACGACAAAGTCGTTGTCGACGAGCCGAGTAGTCCTGAGCTGATGGTTGCTGCCAAGAGTTTCTATGGAGGAGCATTGTTTCCAAATTCTCTTCAAAGAGCAACCTCACTTCCTGTTGATGCTATAGACTTTTAG 2217 40.01 MNGSSTTNSEPDISEYVEVDPTGRYGRYNEVLGKGASKTVYRAFDEYDGIEVAWNQVKLCDFLQTPEDLERLYREIHLLKTLKHKNIMKFYSSWVDTPNRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILKGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSYVARCVGTPEFMAPEIYEEEYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVISGKKPDALYKVKDLEVRYFVEKCLATVSTRLSARELLNDPFLQIDGCDSLLRPIEYYSEYDEVNNSLIRGGPFYGIPHGSLDNGYVNYFGHEAGNGLDYCPIDNEANEIDLFSCQEDEHLADVDITIKGRRRGDDDIFLRLRIADKEGRIRNIYFPFDLENDSALSVANEMVSELDITDQDVKKIADMIDGEIATLVPEWKRGKSSEETPNCTDSNVCHNCALNNSLLDYVSPNNPATKNLHILQCSQEHGCASIHGRFEEITYQVEGSEQFNGDENLHRTTENSNDIHYTDIWAQRDGPDAVSQESLETCNESGTLEQPKLEKEESNVNMDNDHQMEFQTRNSSSSNPSLSFVNDHENEIRQELRWLKAKYQMQLRELRDQQLGVKTKSLSLHPNPNLVETDNGASVSLLSPNFNEAAKSKPALTSLSVSKNITSHSFYAAVDNIMENQTFQDDKVVVDEPSSPELMVAAKSFYGGALFPNSLQRATSLPVDAIDF 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6813534 6816343 + CmPI595203_06g006000.1 Cmu06g0600 418260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0600 738 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu06g0600 738 ProSiteProfiles Protein kinase domain profile. 26 283 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g0600 738 FunFam probable serine/threonine-protein kinase WNK9 109 288 - -
Cmu06g0600 738 CDD STKc_WNK 24 283 - -
Cmu06g0600 738 FunFam Probable serine/threonine-protein kinase WNK1 11 107 - -
Cmu06g0600 738 SUPERFAMILY Protein kinase-like (PK-like) 29 284 IPR011009 -
Cmu06g0600 738 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 379 434 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Cmu06g0600 738 Pfam Protein kinase domain 29 283 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g0600 738 Gene3D Transferase(Phosphotransferase) domain 1 109 288 - -
Cmu06g0600 738 Gene3D Phosphorylase Kinase; domain 1 11 107 - -
Cmu06g0600 738 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 14 623 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Cmu06g0600 738 Coils Coil 603 623 - -
Cmu06g0600 738 Gene3D - 377 465 - -
Cmu06g0600 738 SMART serkin_6 26 283 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1634 Cmu-Chr2:30150663 Cmu06g0600 Cmu-Chr6:6813534 7.60E-227 dispersed
Cmu03g0919 Cmu-Chr3:3853925 Cmu06g0600 Cmu-Chr6:6813534 1.80E-141 dispersed
Cmu04g0690 Cmu-Chr4:21035389 Cmu06g0600 Cmu-Chr6:6813534 9.60E-119 dispersed
Cmu05g0068 Cmu-Chr5:709538 Cmu06g0600 Cmu-Chr6:6813534 2.60E-127 dispersed
Cmu06g0600 Cmu-Chr6:6813534 Cmu06g0954 Cmu-Chr6:13768921 4.00E-183 dispersed
Cmu06g0600 Cmu-Chr6:6813534 Cmu10g2661 Cmu-Chr10:33407916 5.60E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75599 PF00069 Pkinase 4.60E-49 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0600 K08867 - csv:101210511 1363.98