Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0682 ATGAATTCTTCATTCTTTCACTCCCAAAACGCCGATCTCTCGCCGGAATCTTCCTTTGGCTCCTTCGAATCCCTCCGATGGGAAGGTTTTCAAATAAACGGCAACTCTCTGCCCTTCAACGAGAATGATTCCGGAGAAATGCTCCTTCACAGCTTAATCTCCGAGGCTGCCGTGTACCCGCCGGAGAATTCCCCCCGGCAGCCTCCGATCAAAGACGAGGAGGTTGATTCGCTTGGAGAAGAAGACCCCCACAAGAGAAAGTCATACAGAGGAGTCCGCCGGCGACCGTGGGGAAAATTCGCGGCGGAGATACGAGACTCGACCCGACATGGGGTTCGGGTTTGGCTCGGGACATTCGACAGCGCCGAGGCGGCTGCTTTGGCCTACGATCAAGCTGCTTTTTCAATGAGAGGCCCTGCTGCCGTTCTGAATTTTCCGGTGGAAAGAGTTCAGGAATCGCTCAAGGAGATGGAGATGATCAACTCCGCCGCATACGGAGGCGATGGCGAGGGAGACAGCGGATCTCCGGTGGTGGCTCTGAAGAGAAAACACTCTATGAGGAAGAAATTCACGAGAAGAAAGAGCAAAGAGAGAGATGGGATTGAGAAGATTGAGAATAATGTGGTAGTTTTGGAAGATCTTGGCTCTGATTATTTGGAAGAACTTCTAAAGTCGTCGGAGAATCTCCGACCGTGGTGA 699 52.07 MNSSFFHSQNADLSPESSFGSFESLRWEGFQINGNSLPFNENDSGEMLLHSLISEAAVYPPENSPRQPPIKDEEVDSLGEEDPHKRKSYRGVRRRPWGKFAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGPAAVLNFPVERVQESLKEMEMINSAAYGGDGEGDSGSPVVALKRKHSMRKKFTRRKSKERDGIEKIENNVVVLEDLGSDYLEELLKSSENLRPW 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7808550 7809248 + CmPI595203_06g006820.1 Cmu06g0682 418342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0682 232 Gene3D AP2/ERF domain 87 148 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g0682 232 MobiDBLite consensus disorder prediction 59 91 - -
Cmu06g0682 232 CDD AP2 87 147 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g0682 232 PANTHER DNA-BINDING DOMAIN 64 188 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cmu06g0682 232 MobiDBLite consensus disorder prediction 67 87 - -
Cmu06g0682 232 SMART rav1_2 88 152 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g0682 232 FunFam Ethylene-responsive transcription factor 2 87 148 - -
Cmu06g0682 232 SUPERFAMILY DNA-binding domain 88 148 IPR016177 GO:0003677(InterPro)
Cmu06g0682 232 ProSiteProfiles AP2/ERF domain profile. 88 146 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g0682 232 Pfam AP2 domain 88 138 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g0682 232 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g0682 232 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2288 Cmu-Chr1:35157692 Cmu06g0682 Cmu-Chr6:7808550 3.80E-28 dispersed
Cmu01g2289 Cmu-Chr1:35158566 Cmu06g0682 Cmu-Chr6:7808550 7.50E-26 dispersed
Cmu05g0464 Cmu-Chr5:3881839 Cmu06g0682 Cmu-Chr6:7808550 3.50E-66 dispersed
Cmu06g0682 Cmu-Chr6:7808550 Cmu07g0155 Cmu-Chr7:1473892 1.40E-41 dispersed
Cmu06g0680 Cmu-Chr6:7769344 Cmu06g0682 Cmu-Chr6:7808550 6.60E-22 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6371 PF00847 AP2 6.00E-15 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0682 K14516 - csv:101206564 401.364